BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00670.1

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475559 jgi|Araly1|475559|fgenesh2_kg.2__689__ATCG00670.1         1050    0.0  
  Ahg315557 jgi|Araly1|315557|fgenesh1_pm.C_scaffold_2000590           785    0.0  


> Ahg475559 jgi|Araly1|475559|fgenesh2_kg.2__689__ATCG00670.1
Length=586

 Score = 1050 bits (568),  Expect = 0.0
 Identities = 580/586 (99%), Gaps = 0/586 (0%)
 Strand=Plus/Plus

Query  1    ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAAGTCCTGGAGAAGGAGATACATCTTGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAAGTCCTGGAGAAGGAGATACATCTTGG  60

Query  61   GTTGACATATACAACCGACTTTATCGAGAAAGATTAttttttttAGGCCAAGAGGTTGAT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTTGACATATACAACCGACTTTATCGAGAAAGATTATTTTTTTTAGGCCAAGAGGTTGAT  120

Query  121  ACCGAAATCTCGAATCAACTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACCGAAATCTCGAATCAACTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACC  180

Query  181  AAAGATCTTTATTTGTTTATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAAGATCTTTATTTGTTTATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATT  240

Query  241  TATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCT  300

Query  301  TCAATAGCATCCTTTATCCTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCAC  360
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  301  TCAATAGCATCCTTTATCCTGGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCAC  360

Query  361  GCTAGGGTAATGATCCATCAACCCGCTAGTTCGTTTTATGAGGCACAAACGGGAGAATTT  420
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  361  GCTTGGGTAATGATCCATCAACCCGCTAGCTCGTTTTATGAGGCACAAACGGGAGAATTT  420

Query  421  ATCTTGGAAGCGGAAGAATTACTTAAACTTCGCGAAACCATCACAAGGGTTTATGTACAA  480
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  421  ATCTTGGAAGCGGAAGAATTACTAAAACTTCGCGAAACCATCACAAGGGTTTATGTACAA  480

Query  481  AGAACGGGCAAACCTATATGGGTTATATCCGAAGACATGGAACGGGATGTTTTTATGTCA  540
            |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct  481  AGAACGGGCAAACCTATATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCA  540

Query  541  GCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTC  586
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTC  586


> Ahg315557 jgi|Araly1|315557|fgenesh1_pm.C_scaffold_2000590
Length=519

 Score =  785 bits (425),  Expect = 0.0
 Identities = 487/513 (95%), Gaps = 19/513 (4%)
 Strand=Plus/Plus

Query  79   CTTTATCGAGAAAGATTAttttttttAGGCCAAGAGGTTGATACCGAAATCTCGAATCAA  138
            |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  26   CTTT-TCGAAAAAGATTATTTTTTTTAGGCCAAGAGGTTGATACCGAAATCTCGAATCAA  84

Query  139  CTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACCAAAGATCTTTATTTGTTT  198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  85   CTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACCAAAGATCTTTATTTGTTT  144

Query  199  ATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATTTATGATACTATGCAATTT  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  145  ATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATTTATGATACTATGCAATTT  204

Query  259  GTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCTTCAATAGCATCCTTTATC  318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  205  GTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCTTCAATAGCATCCTTTATC  264

Query  319  CTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCACGCTAGGGTAATGATCCAT  378
            || ||||||||||||||||||||||| || |           |   |  |||||||||||
Sbjct  265  CTGGTCGGAGGAGCAATTACCAAACG-AT-G-----------G---G--TAATGATCCAT  306

Query  379  CAACCCGCTAGTTCGTTTTATGAGGCACAAACGGGAGAATTTATCTTGGAAGCGGAAGAA  438
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  307  CAACCCGCTAGCTCGTTTTATGAGGCACAAACGGGAGAATTTATCTTGGAAGCGGAAGAA  366

Query  439  TTACTTAAACTTCGCGAAACCATCACAAGGGTTTATGTACAAAGAACGGGCAAACCTATA  498
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  367  TTACTAAAACTTCGCGAAACCATGACAAGGGTTTATGTACAAAGAACGGGCAAACCTATA  426

Query  499  TGGGTTATATCCGAAGACATGGAACGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCT  558
            |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  427  TGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCT  486

Query  559  CATGGAATTGTTGATCTTGTAGCGGTTCAATAA  591
            |||||||||||||||||||||||||||||||||
Sbjct  487  CATGGAATTGTTGATCTTGTAGCGGTTCAATAA  519


 Score = 63.9 bits (34),  Expect = 1e-09
 Identities = 34/34 (100%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  1   ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAA  34
           ||||||||||||||||||||||||||||||||||
Sbjct  1   ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAA  34



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21634218963


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5