BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG00670.1 Length=591 Score E Sequences producing significant alignments: (Bits) Value Ahg475559 jgi|Araly1|475559|fgenesh2_kg.2__689__ATCG00670.1 1050 0.0 Ahg315557 jgi|Araly1|315557|fgenesh1_pm.C_scaffold_2000590 785 0.0 > Ahg475559 jgi|Araly1|475559|fgenesh2_kg.2__689__ATCG00670.1 Length=586 Score = 1050 bits (568), Expect = 0.0 Identities = 580/586 (99%), Gaps = 0/586 (0%) Strand=Plus/Plus Query 1 ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAAGTCCTGGAGAAGGAGATACATCTTGG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAAGTCCTGGAGAAGGAGATACATCTTGG 60 Query 61 GTTGACATATACAACCGACTTTATCGAGAAAGATTAttttttttAGGCCAAGAGGTTGAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTTGACATATACAACCGACTTTATCGAGAAAGATTATTTTTTTTAGGCCAAGAGGTTGAT 120 Query 121 ACCGAAATCTCGAATCAACTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACCGAAATCTCGAATCAACTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACC 180 Query 181 AAAGATCTTTATTTGTTTATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAAGATCTTTATTTGTTTATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATT 240 Query 241 TATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCT 300 Query 301 TCAATAGCATCCTTTATCCTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCAC 360 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCAATAGCATCCTTTATCCTGGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCAC 360 Query 361 GCTAGGGTAATGATCCATCAACCCGCTAGTTCGTTTTATGAGGCACAAACGGGAGAATTT 420 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 361 GCTTGGGTAATGATCCATCAACCCGCTAGCTCGTTTTATGAGGCACAAACGGGAGAATTT 420 Query 421 ATCTTGGAAGCGGAAGAATTACTTAAACTTCGCGAAACCATCACAAGGGTTTATGTACAA 480 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 421 ATCTTGGAAGCGGAAGAATTACTAAAACTTCGCGAAACCATCACAAGGGTTTATGTACAA 480 Query 481 AGAACGGGCAAACCTATATGGGTTATATCCGAAGACATGGAACGGGATGTTTTTATGTCA 540 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 481 AGAACGGGCAAACCTATATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCA 540 Query 541 GCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTC 586 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTC 586 > Ahg315557 jgi|Araly1|315557|fgenesh1_pm.C_scaffold_2000590 Length=519 Score = 785 bits (425), Expect = 0.0 Identities = 487/513 (95%), Gaps = 19/513 (4%) Strand=Plus/Plus Query 79 CTTTATCGAGAAAGATTAttttttttAGGCCAAGAGGTTGATACCGAAATCTCGAATCAA 138 |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26 CTTT-TCGAAAAAGATTATTTTTTTTAGGCCAAGAGGTTGATACCGAAATCTCGAATCAA 84 Query 139 CTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACCAAAGATCTTTATTTGTTT 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 CTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACCAAAGATCTTTATTTGTTT 144 Query 199 ATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATTTATGATACTATGCAATTT 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 145 ATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATTTATGATACTATGCAATTT 204 Query 259 GTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCTTCAATAGCATCCTTTATC 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 205 GTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCTTCAATAGCATCCTTTATC 264 Query 319 CTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCACGCTAGGGTAATGATCCAT 378 || ||||||||||||||||||||||| || | | | ||||||||||| Sbjct 265 CTGGTCGGAGGAGCAATTACCAAACG-AT-G-----------G---G--TAATGATCCAT 306 Query 379 CAACCCGCTAGTTCGTTTTATGAGGCACAAACGGGAGAATTTATCTTGGAAGCGGAAGAA 438 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 CAACCCGCTAGCTCGTTTTATGAGGCACAAACGGGAGAATTTATCTTGGAAGCGGAAGAA 366 Query 439 TTACTTAAACTTCGCGAAACCATCACAAGGGTTTATGTACAAAGAACGGGCAAACCTATA 498 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 367 TTACTAAAACTTCGCGAAACCATGACAAGGGTTTATGTACAAAGAACGGGCAAACCTATA 426 Query 499 TGGGTTATATCCGAAGACATGGAACGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCT 558 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 427 TGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCT 486 Query 559 CATGGAATTGTTGATCTTGTAGCGGTTCAATAA 591 ||||||||||||||||||||||||||||||||| Sbjct 487 CATGGAATTGTTGATCTTGTAGCGGTTCAATAA 519 Score = 63.9 bits (34), Expect = 1e-09 Identities = 34/34 (100%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 1 ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAA 34 |||||||||||||||||||||||||||||||||| Sbjct 1 ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAA 34 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21634218963 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5