BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00730.1

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475611 jgi|Araly1|475611|fgenesh2_kg.2__741__ATCG00730.1          837    0.0  
  Ahg475555 jgi|Araly1|475555|fgenesh2_kg.2__685__ATCG00730.1          837    0.0  


> Ahg475611 jgi|Araly1|475611|fgenesh2_kg.2__741__ATCG00730.1
Length=459

 Score =  837 bits (453),  Expect = 0.0
 Identities = 457/459 (99%), Gaps = 0/459 (0%)
 Strand=Plus/Plus

Query  25   TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG  84
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG  60

Query  85   GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTTATTCTTGGTACCATT  144
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTCATTCTTGGTACCATT  120

Query  145  GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT  204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT  180

Query  205  TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT  240

Query  265  CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA  300

Query  325  TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA  384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA  360

Query  385  GCGACAACCGTCTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA  444
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GCGACAACCGTTTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA  420

Query  445  TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA  483
            |||||||||||||||||||||||||||||||||||||||
Sbjct  421  TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA  459


> Ahg475555 jgi|Araly1|475555|fgenesh2_kg.2__685__ATCG00730.1
Length=459

 Score =  837 bits (453),  Expect = 0.0
 Identities = 457/459 (99%), Gaps = 0/459 (0%)
 Strand=Plus/Plus

Query  25   TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG  84
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG  60

Query  85   GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTTATTCTTGGTACCATT  144
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTCATTCTTGGTACCATT  120

Query  145  GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT  204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT  180

Query  205  TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT  240

Query  265  CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA  300

Query  325  TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA  384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA  360

Query  385  GCGACAACCGTCTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA  444
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GCGACAACCGTTTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA  420

Query  445  TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA  483
            |||||||||||||||||||||||||||||||||||||||
Sbjct  421  TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17513415351


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5