BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG00730.1 Length=483 Score E Sequences producing significant alignments: (Bits) Value Ahg475611 jgi|Araly1|475611|fgenesh2_kg.2__741__ATCG00730.1 837 0.0 Ahg475555 jgi|Araly1|475555|fgenesh2_kg.2__685__ATCG00730.1 837 0.0 > Ahg475611 jgi|Araly1|475611|fgenesh2_kg.2__741__ATCG00730.1 Length=459 Score = 837 bits (453), Expect = 0.0 Identities = 457/459 (99%), Gaps = 0/459 (0%) Strand=Plus/Plus Query 25 TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG 84 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG 60 Query 85 GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTTATTCTTGGTACCATT 144 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTCATTCTTGGTACCATT 120 Query 145 GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT 180 Query 205 TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT 240 Query 265 CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA 300 Query 325 TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA 360 Query 385 GCGACAACCGTCTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA 444 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GCGACAACCGTTTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA 420 Query 445 TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA 483 ||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA 459 > Ahg475555 jgi|Araly1|475555|fgenesh2_kg.2__685__ATCG00730.1 Length=459 Score = 837 bits (453), Expect = 0.0 Identities = 457/459 (99%), Gaps = 0/459 (0%) Strand=Plus/Plus Query 25 TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG 84 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG 60 Query 85 GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTTATTCTTGGTACCATT 144 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTCATTCTTGGTACCATT 120 Query 145 GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT 180 Query 205 TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT 240 Query 265 CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA 300 Query 325 TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA 360 Query 385 GCGACAACCGTCTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA 444 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GCGACAACCGTTTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA 420 Query 445 TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA 483 ||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA 459 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17513415351 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5