BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00750.1
Length=417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475553 jgi|Araly1|475553|fgenesh2_kg.2__683__ATCG00750.1 743 0.0
Ahg475613 jgi|Araly1|475613|fgenesh2_kg.2__743__ATCG00750.1 732 0.0
> Ahg475553 jgi|Araly1|475553|fgenesh2_kg.2__683__ATCG00750.1
Length=417
Score = 743 bits (402), Expect = 0.0
Identities = 412/417 (99%), Gaps = 0/417 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAAACCTATATTAAGAATTGGTTCGCGTAAAAATACACGTAGTGGTTCACGTAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAAAACCTATATTAAGAATTGGTTCGCGTAAAAATACACGTAGTGGTTCACGTAAA 60
Query 61 AATGTACGTAGAATACCAAAGGGAGTTATTCATGTTCAAGCAAGTTTCAACAATACCATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATGTACGTAGAATACCAAAGGGAGTTATTCATGTTCAAGCAAGTTTCAACAATACCATT 120
Query 121 GTAACCGTTACAGATGTACGGGGTCGGGTGATTTCTTGGTCCTCCGCAGGTACTTGTGGA 180
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GTGACCGTTACAGATGTACGGGGTCGGGTGATTTCTTGGTCCTCCGCGGGTACTTGTGGA 180
Query 181 TTCCGGGGTACAAGAAGAGGAACACCCTTTGCTGCCCAAACCGCAGCAGGAAATGCTATT 240
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 TTCCGGGGTACAAGAAGAGGAACGCCTTTTGCTGCCCAAACCGCAGCAGGAAATGCTATT 240
Query 241 CGAGCAGTAGTGGATCAAGGTATGCAACGAGCTGAAGTAAGGATAAAAGGCCCTGGACTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGAGCAGTAGTGGATCAAGGTATGCAACGAGCTGAAGTAAGGATAAAAGGCCCTGGACTC 300
Query 301 GGAAGAGATGCGGCATTACGAGCTATTCGTAGAAGCGGTATACTTTTAAGTTTCGTACGA 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAAGAGATGCAGCATTACGAGCTATTCGTAGAAGCGGTATACTTTTAAGTTTCGTACGA 360
Query 361 GATGTAACCCCTATGCCACATAATGGTTGTAGACCCCCTaaaaaaaGACGTGTATAG 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATGTAACCCCTATGCCACATAATGGTTGTAGACCCCCTAAAAAAAGACGTGTATAG 417
> Ahg475613 jgi|Araly1|475613|fgenesh2_kg.2__743__ATCG00750.1
Length=417
Score = 732 bits (396), Expect = 0.0
Identities = 410/417 (98%), Gaps = 0/417 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAAACCTATATTAAGAATTGGTTCGCGTAAAAATACACGTAGTGGTTCACGTAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAAAACCTATATTAAGAATTGGTTCGCGTAAAAATACACGTAGTGGTTCACGTAAA 60
Query 61 AATGTACGTAGAATACCAAAGGGAGTTATTCATGTTCAAGCAAGTTTCAACAATACCATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATGTACGTAGAATACCAAAGGGAGTTATTCATGTTCAAGCAAGTTTCAACAATACCATT 120
Query 121 GTAACCGTTACAGATGTACGGGGTCGGGTGATTTCTTGGTCCTCCGCAGGTACTTGTGGA 180
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GTGACCGTTACAGATGTACGGGGTCGGGTGATTTCTTGGTCCTCCGTGGGTACTTGTGGA 180
Query 181 TTCCGGGGTACAAGAAGAGGAACACCCTTTGCTGCCCAAACCGCAGCAGGAAATGCTATT 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TTCCGGGGTACAAGAAGAGGAACACCTTTTGCTGCCCAAACCGCAGCAGGAAATGCTATT 240
Query 241 CGAGCAGTAGTGGATCAAGGTATGCAACGAGCTGAAGTAAGGATAAAAGGCCCTGGACTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGAGCAGTAGTGGATCAAGGTATGCAACGAGCTGAAGTAAGGATAAAAGGCCCTGGACTC 300
Query 301 GGAAGAGATGCGGCATTACGAGCTATTCGTAGAAGCGGTATACTTTTAAGTTTCGTACGA 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GGAAGAGATGCAGCATTACGAGCTATTCGTAGAAGCGGTATACTTTTAAGTTTTGTACGA 360
Query 361 GATGTAACCCCTATGCCACATAATGGTTGTAGACCCCCTaaaaaaaGACGTGTATAG 417
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATGTAACCCCTATGCCATATAATGGTTGTAGACCCCCTAAAAAAAGACGTGTATAG 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14995146477
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5