BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00770.1
Length=405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925562 jgi|Araly1|925562|scaffold_201123.1 715 0.0
Ahg925444 jgi|Araly1|925444|scaffold_201005.1 715 0.0
> Ahg925562 jgi|Araly1|925562|scaffold_201123.1
Length=600
Score = 715 bits (387), Expect = 0.0
Identities = 399/405 (99%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAAAGACACCATTGCTGATATAATAACCTCTATACGAAATGCTGACATGAATAGA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ATGGGGAAAGACACTATTGCTGATATAATAACCTCTATACGAAATGCTGACATGAATAGA 235
Query 61 AAAGGAACGGTTCGGATAGGATCGACTAACATCACGGAAAGTATTGTTAAAATCCTTTTA 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 236 AAAGGAACGGTTCGGATAGGATCGACTAACATCACCGAAAGTATTGTTAAAATCCTTTTA 295
Query 121 CGAGAGGGTTTTATCGAAAACGTAAGGAAACATCGCGAAAACAACCAATATTTTTTGATT 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 296 CGAGAGGGTTTTATCGAAAACGTAAGGAAACATCGCGAAAGCAACCAATATTTTTTGATT 355
Query 181 TTAACCCTAAGACATAGACGAAATAAGAAAGAATCCTACAAAACGATTTTAAATTTAAAG 240
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 356 TTAACCCTAAGACACAGACGAAATAAGAAAGAATCCTATAAAACGATTTTAAATTTAAAG 415
Query 241 AGAATAAGTCGACCGGGTCTACGAATCTATTCTAACTCTCAACGAATTCCACGAATTTTA 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGAATAAGTCGGCCGGGTCTACGAATCTATTCTAACTCTCAACGAATTCCACGAATTTTA 475
Query 301 GGCGGAATAGGAATTGTAATCCTTTCGACTTCTCAAGGTATAATGACAGACCGAGAAGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GGCGGAATAGGAATTGTAATCCTTTCGACTTCTCAAGGTATAATGACAGACCGAGAAGCT 535
Query 361 CGACTAAAAAGAATCGGCGGAGAAATTTTGTGTTATATATGGTAA 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CGACTAAAAAGAATCGGCGGAGAAATTTTGTGTTATATATGGTAA 580
> Ahg925444 jgi|Araly1|925444|scaffold_201005.1
Length=627
Score = 715 bits (387), Expect = 0.0
Identities = 399/405 (99%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAAAGACACCATTGCTGATATAATAACCTCTATACGAAATGCTGACATGAATAGA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 ATGGGGAAAGACACTATTGCTGATATAATAACCTCTATACGAAATGCTGACATGAATAGA 247
Query 61 AAAGGAACGGTTCGGATAGGATCGACTAACATCACGGAAAGTATTGTTAAAATCCTTTTA 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 248 AAAGGAACGGTTCGGATAGGATCGACTAACATCACCGAAAGTATTGTTAAAATCCTTTTA 307
Query 121 CGAGAGGGTTTTATCGAAAACGTAAGGAAACATCGCGAAAACAACCAATATTTTTTGATT 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 308 CGAGAGGGTTTTATCGAAAACGTAAGGAAACATCGCGAAAGCAACCAATATTTTTTGATT 367
Query 181 TTAACCCTAAGACATAGACGAAATAAGAAAGAATCCTACAAAACGATTTTAAATTTAAAG 240
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 368 TTAACCCTAAGACACAGACGAAATAAGAAAGAATCCTATAAAACGATTTTAAATTTAAAG 427
Query 241 AGAATAAGTCGACCGGGTCTACGAATCTATTCTAACTCTCAACGAATTCCACGAATTTTA 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AGAATAAGTCGGCCGGGTCTACGAATCTATTCTAACTCTCAACGAATTCCACGAATTTTA 487
Query 301 GGCGGAATAGGAATTGTAATCCTTTCGACTTCTCAAGGTATAATGACAGACCGAGAAGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GGCGGAATAGGAATTGTAATCCTTTCGACTTCTCAAGGTATAATGACAGACCGAGAAGCT 547
Query 361 CGACTAAAAAGAATCGGCGGAGAAATTTTGTGTTATATATGGTAA 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CGACTAAAAAGAATCGGCGGAGAAATTTTGTGTTATATATGGTAA 592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14537279409
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5