BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG00790.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value Ahg915009 jgi|Araly1|915009|Al_scaffold_0001_5263 737 0.0 Ahg907857 jgi|Araly1|907857|Al_scaffold_0002_938 737 0.0 Ahg900654 jgi|Araly1|900654|Al_scaffold_0004_1304 438 1e-122 Ahg475616 jgi|Araly1|475616|fgenesh2_kg.2__746__ATCG00790.1 420 4e-117 Ahg936802 jgi|Araly1|936802|scaffold_500993.1 320 5e-87 > Ahg915009 jgi|Araly1|915009|Al_scaffold_0001_5263 Length=408 Score = 737 bits (399), Expect = 0.0 Identities = 405/408 (99%), Gaps = 0/408 (0%) Strand=Plus/Plus Query 1 ATGCTTAGTCCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCTTAGTCCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATA 60 Query 61 TCTTCTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTTCTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCT 120 Query 121 TGGATCACATCTAGACAAATAGAAGCAGGGCGACGCGCAATGACACGAAATGTACGACGT 180 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 TGGATCACATCTAGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATGTACGACGT 180 Query 181 GGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAA 240 Query 241 ACGCGTATGGGTTCTGGGAAAGGATCCCCTGAGTATTGGGTAGCTGTGGTTAAACCAGGT 300 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 ACGCGTATGGGTTCTGGGAAAGGATCCCCCGAGTATTGGGTAGCTGTGGTTAAACCAGGT 300 Query 301 AAAATCCTTTATGAAATGGGTGGTGTACCCGAAAATATAGCAAGAAAAGCTATTTCAATA 360 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 301 AAAATCCTTTATGAAATGGGTGGTGTACCCGAAAATATAGCCAGAAAAGCTATTTCAATA 360 Query 361 GCGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATAG 408 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GCGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATAG 408 > Ahg907857 jgi|Araly1|907857|Al_scaffold_0002_938 Length=408 Score = 737 bits (399), Expect = 0.0 Identities = 405/408 (99%), Gaps = 0/408 (0%) Strand=Plus/Plus Query 1 ATGCTTAGTCCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCTTAGTCCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATA 60 Query 61 TCTTCTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTTCTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCT 120 Query 121 TGGATCACATCTAGACAAATAGAAGCAGGGCGACGCGCAATGACACGAAATGTACGACGT 180 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 TGGATCACATCTAGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATGTACGACGT 180 Query 181 GGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAA 240 Query 241 ACGCGTATGGGTTCTGGGAAAGGATCCCCTGAGTATTGGGTAGCTGTGGTTAAACCAGGT 300 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 ACGCGTATGGGTTCTGGGAAAGGATCCCCCGAGTATTGGGTAGCTGTGGTTAAACCAGGT 300 Query 301 AAAATCCTTTATGAAATGGGTGGTGTACCCGAAAATATAGCAAGAAAAGCTATTTCAATA 360 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 301 AAAATCCTTTATGAAATGGGTGGTGTACCCGAAAATATAGCCAGAAAAGCTATTTCAATA 360 Query 361 GCGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATAG 408 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GCGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATAG 408 > Ahg900654 jgi|Araly1|900654|Al_scaffold_0004_1304 Length=873 Score = 438 bits (237), Expect = 1e-122 Identities = 345/396 (87%), Gaps = 12/396 (3%) Strand=Plus/Plus Query 15 AAGAACCAGA-TTTC-GTAAACAACATCGAGGAAGACTAAAAGGAATATCTTCTCGTGGG 72 ||||| || | |||| | ||||| |||||||||||| | |||||||||||| ||| ||| Sbjct 486 AAGAA-CAAAGTTTCAG-AAACATCATCGAGGAAGAATTAAAGGAATATCTACTCAAGGG 543 Query 73 AATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCTTGGATCACATCT 132 || || | |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 544 AA---TA--T-TTTTGGTAGATATGCTCTTCAAACACTTGAACCCGCTTGGATCACATCT 597 Query 133 AGACAAATAGAAGCAGGGCGACGCGCAATGACACGAAATGTACGACGTGGTGGAAAAATT 192 ||||||||||||||||||||||| ||||||||||||||| || |||||||| |||| || Sbjct 598 AGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATATAGGACGTGGTTTAAAAGTT 657 Query 193 TGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAAACGCGTATGGGT 252 | || | ||||||| ||||||||||||||||||||||||| | |||||||| |||||| Sbjct 658 CGAGTTCATATATTTGCAGACAAACCAGTTACAGTAAGACCCCCCGAAACGCGAATGGGT 717 Query 253 TC-TGGGAAAGGATCCCCTGAGTATTGGGTAGCTGTGGTTAAACCAGGTAAAATCCTTTA 311 | |||||||||| || | || ||||||||||||||||||||||||||||||| |||| Sbjct 718 -CGTGGGAAAGGAGATCCAGCGTTTTGGGTAGCTGTGGTTAAACCAGGTAAAATCATTTA 776 Query 312 TGAAATGGGTGGTGTACCCGAAAATATAGCAAGAAAAGCTATTTCAATAGCGGCATCAAA 371 |||||||||||||||| ||||||| ||||| ||| |||||||| |||| ||||||||||| Sbjct 777 TGAAATGGGTGGTGTATCCGAAAAAATAGCCAGAGAAGCTATTACAATTGCGGCATCAAA 836 Query 372 AATGCCTATAAAAACCCAATTCATTATTTCTGAATA 407 | |||||||||||||| |||||||||||| |||||| Sbjct 837 ATTGCCTATAAAAACCAAATTCATTATTTTTGAATA 872 > Ahg475616 jgi|Araly1|475616|fgenesh2_kg.2__746__ATCG00790.1 Length=248 Score = 420 bits (227), Expect = 4e-117 Identities = 243/250 (97%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 160 ATGACACGAAATGTACGACGTGGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCA 219 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 ATGACACGAAATGTACGACGTGGTGAAAAAATTTGGGTACGTATATTTCCAGACAAACCA 60 Query 220 GTTACAGTAAGACCTGCGGAAACGCGTATGGGTTCTGGGAAAGGATCCCCTGAGTATTGG 279 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 GTTACAGTAAGACCTGCGGAAACGCGTATGGGTTCTGGGAAAGGATCCCCCGAGTATTGG 120 Query 280 GTAGCTGTGGTTAAACCAGGTAAAATCCTTTATGA-AATGGGTGGTGTACCCGAAAATAT 338 |||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 121 GTAGCTGTGGCTAAACCAGGTAAAATCCTTTAT-ATAATGGGTGGTGTACCCGAAAATAT 179 Query 339 AGCAAGAAAAGCTATTTCAATAGCGGCATCAAAAATGCCTATAAAAACCCAATTCATTAT 398 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 180 AGCCAGAAAAGCTATTTCAATAGCGGCATCAAAAATGCCTATAAAAACC-AATTCATTAT 238 Query 399 TTCTGAATAG 408 |||||||||| Sbjct 239 TTCTGAATAG 248 > Ahg936802 jgi|Araly1|936802|scaffold_500993.1 Length=704 Score = 320 bits (173), Expect = 5e-87 Identities = 179/182 (98%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 10 CCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATATCTTCTCGT 69 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 CCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATATCTTCTCGT 582 Query 70 GGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCTTGGATCACA 129 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 583 GGGAATCATATTTGTTTTGGCAGATATGCTCGTCAAACACTTGAACCCGCTTGGATCACA 642 Query 130 TCTAGACAAATAGAAGCAGGGCGACGCGCAATGACACGAAATGTACGACGTGGTGGAAAA 189 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 643 TCTAGACAAATAGAAGCAGGGCGACGAGCAATGACACGAAATGTACGACGTGGTGGAAAA 702 Query 190 AT 191 || Sbjct 703 AT 704 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14651746176 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5