BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00800.1
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475549 jgi|Araly1|475549|fgenesh2_kg.2__679__ATCG00800.1 1177 0.0
Ahg473322 jgi|Araly1|473322|fgenesh2_kg.1__3276__ATCG00800.1 1160 0.0
Ahg936801 jgi|Araly1|936801|scaffold_500992.1 597 3e-170
Ahg475617 jgi|Araly1|475617|fgenesh2_kg.2__747__ATCG00800.1 588 2e-167
> Ahg475549 jgi|Araly1|475549|fgenesh2_kg.2__679__ATCG00800.1
Length=649
Score = 1177 bits (637), Expect = 0.0
Identities = 645/649 (99%), Gaps = 0/649 (0%)
Strand=Plus/Plus
Query 1 ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAGTCATCATTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAGTCATCATTCT 60
Query 61 CTTTGGTTTGCACAACCAAAAAAGTATTCTGAAGGTTTAGAAGAAGATaaaaaaaTACGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTGGTTTGCACAACCAAAAAAGTATTCTGAAGGTTTAGAAGAAGATAAAAAAATACGA 120
Query 121 GACTGTATTAAAAATTATGTCCaaaaaaaTATAAGAATATCCTCTGGTATGGAGGGAATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACTGTATTAAAAATTATGTCCAAAAAAATATAAGAATATCCTCTGGTATGGAGGGAATT 180
Query 181 GCACGTATTGAAATTCAAAAAAGAATCGATCTCATCCAGATCATAATCTATATGGGATTT 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCACGTATCGAAATTCAAAAAAGAATCGATCTCATCCAGATCATAATCTATATGGGATTT 240
Query 241 CCTAAATTATTAATTGAAGATAAACCCCGAAGAGTCGAAGAATTACAGATGAATGTTCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTAAATTATTAATTGAAGATAAACCCCGAAGAGTCGAAGAATTACAGATGAATGTTCAA 300
Query 301 AAAGAACTAAATTGTGTCAATAGAAAACTCAACATTGCTATTACCAGAATTTCCAATCCG 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGAACTTAATTGTGTCAATAGAAAACTCAACATTGCTATTACCAGAATTTCCAATCCG 360
Query 361 TATGGGGATCCTAATATTCTTGCAGAATTTATCGCTGGACAATTAAAAAATCGCGTTTCT 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 TATGGGGATCCTAATATTCTTGCAGAATTTATAGCTGGACAATTAAAAAATCGCGTTTCT 420
Query 421 TTTCGAAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGAATACAAAAGGAATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTCGAAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGAATACAAAAGGAATT 480
Query 481 CAAGTACAAATTGCAGGACGTATCGACGGAAAAGAAATTGCACGTGTTGAATGGATCAGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAAGTACAAATTGCAGGACGTATCGACGGAAAAGAAATTGCACGTGTTGAATGGATCAGA 540
Query 541 GAAGGCAGAGTTCCTTTACAAACAATTGAAGCTAAAATTGATTATTGTTCCTATACAGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAGGCAGAGTTCCTTTACAAACAATTGAAGCTAAAATTGATTATTGTTCCTATACAGTT 600
Query 601 CGAACTATTTATGGGGTTTTAGGAATAAAAATTTGGATATTCGTAGACG 649
||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 CGAACTATTTATGGGGTCTTAGGAATAAAAATTTGGATATTCGTAGACG 649
> Ahg473322 jgi|Araly1|473322|fgenesh2_kg.1__3276__ATCG00800.1
Length=649
Score = 1160 bits (628), Expect = 0.0
Identities = 642/649 (99%), Gaps = 0/649 (0%)
Strand=Plus/Plus
Query 1 ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAGTCATCATTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAGTCATCATTCT 60
Query 61 CTTTGGTTTGCACAACCAAAAAAGTATTCTGAAGGTTTAGAAGAAGATaaaaaaaTACGA 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CTTTGGTTTGCACAACCAAAAAAGTATTCAGAAGGTTTAGAAGAAGATAAAAAAATACGA 120
Query 121 GACTGTATTAAAAATTATGTCCaaaaaaaTATAAGAATATCCTCTGGTATGGAGGGAATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACTGTATTAAAAATTATGTCCAAAAAAATATAAGAATATCCTCTGGTATGGAGGGAATT 180
Query 181 GCACGTATTGAAATTCAAAAAAGAATCGATCTCATCCAGATCATAATCTATATGGGATTT 240
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 GCACGTATCGAAATTCAAAAAAGAATCAATCTCATCCAGATCATAATCTATATGGGATTT 240
Query 241 CCTAAATTATTAATTGAAGATAAACCCCGAAGAGTCGAAGAATTACAGATGAATGTTCAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CCTAAATTATTAATTGAAGATAAACCCCGAAGAGTCGAAGAATTACAGATAAATGTTCAA 300
Query 301 AAAGAACTAAATTGTGTCAATAGAAAACTCAACATTGCTATTACCAGAATTTCCAATCCG 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGAACTTAATTGTGTCAATAGAAAACTCAACATTGCTATTACCAGAATTTCCAATCCG 360
Query 361 TATGGGGATCCTAATATTCTTGCAGAATTTATCGCTGGACAATTAAAAAATCGCGTTTCT 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 TATGGGGATCCTAATATTCTTGCAGAATTTATAGCTGGACAATTAAAAAATCGCGTTTCT 420
Query 421 TTTCGAAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGAATACAAAAGGAATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTCGAAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGAATACAAAAGGAATT 480
Query 481 CAAGTACAAATTGCAGGACGTATCGACGGAAAAGAAATTGCACGTGTTGAATGGATCAGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAAGTACAAATTGCAGGACGTATCGACGGAAAAGAAATTGCACGTGTTGAATGGATCAGA 540
Query 541 GAAGGCAGAGTTCCTTTACAAACAATTGAAGCTAAAATTGATTATTGTTCCTATACAGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAGGCAGAGTTCCTTTACAAACAATTGAAGCTAAAATTGATTATTGTTCCTATACAGTT 600
Query 601 CGAACTATTTATGGGGTTTTAGGAATAAAAATTTGGATATTCGTAGACG 649
||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 CGAACTATTTATGGGGTCTTAGGAATAAAAATTTGGATATTCGTAGACG 649
> Ahg936801 jgi|Araly1|936801|scaffold_500992.1
Length=729
Score = 597 bits (323), Expect = 3e-170
Identities = 377/400 (94%), Gaps = 16/400 (4%)
Strand=Plus/Plus
Query 258 AGATAAACCCCGAAGAGTCGAAGAATTACAGATGAATGTTCAAAAAGAACTAAATTGTGT 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGATAAACCCCGAAGAGTCGAAGAATTACAGATGAATGTTCAAAAAGAACTAAATTGTGT 60
Query 318 CAATAGAAAACTCAACATTGCTATTACCAGAATTTCCAATCCGTATGGGGATCCTAATAT 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAATAGAAAACTCAACATTGCTATTACCAGAATTTCCAATCCGTATGGGGATCCTAATAT 120
Query 378 TCTTGCAGAATTTATCGCTGGACAATTAAAAAATCGCGTTTCTTTTCGAAAAGCAATGAA 437
||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 121 TCTTGCAGAATTTATAGCTGGACAATTAAAAGATCGTGTTTCTTTTCGAAAAGCAATGAA 180
Query 438 AAAAGCTATTGAATTAACTGAACAGGCGAATACAAAAGGAATTCAAGTACAAATTGCAGG 497
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 AAAAGCTATTGAATTAACTGAACAAGCGAATACAAAAGGAATTCAAGTACAAATTGCAGG 240
Query 498 ACGTATCGACGGAAAAGAAATTGCACGTGTTGAATGGATCAGAGAAGGCAGAGTTCCTTT 557
||||||||||||||||||||||||||| | | || ||||| |||||||
Sbjct 241 ACGTATCGACGGAAAAGAAATTGCACGC-T--A--GG--CAGAG---------TTCCTTT 284
Query 558 ACAAACAATTGAAGCTAAAATTGATTATTGTTCCTATACAGTTCGAACTATTTATGGGGT 617
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ACAAACAAGTGAAGCTAAAATTGATTATTGTTCCTATACAGTTCGAACTATTTATGGGGT 344
Query 618 TTTAGGAATAAAAATTTGGATATTCGTAGACGAAGAATAA 657
|||||||||||||||||||||||||||||||||||||||
Sbjct 345 CTTAGGAATAAAAATTTGGATATTCGTAGACGAAGAATAA 384
> Ahg475617 jgi|Araly1|475617|fgenesh2_kg.2__747__ATCG00800.1
Length=330
Score = 588 bits (318), Expect = 2e-167
Identities = 324/327 (99%), Gaps = 0/327 (0%)
Strand=Plus/Plus
Query 169 ATGGAGGGAATTGCACGTATTGAAATTCAAAAAAGAATCGATCTCATCCAGATCATAATC 228
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGGAATTGCACGTATCGAAATTCAAAAAAGAATCGATCTCATCCAGATCATAATC 60
Query 229 TATATGGGATTTCCTAAATTATTAATTGAAGATAAACCCCGAAGAGTCGAAGAATTACAG 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATATGGGATTTCCTAAATTATTAATTGAAGATAAACCCCGAAGAGTCGAAGAATTACAG 120
Query 289 ATGAATGTTCAAAAAGAACTAAATTGTGTCAATAGAAAACTCAACATTGCTATTACCAGA 348
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGAATGTTCAAAAAGAACTTAATTGTGTCAATAGAAAACTCAACATTGCTATTACCAGA 180
Query 349 ATTTCCAATCCGTATGGGGATCCTAATATTCTTGCAGAATTTATCGCTGGACAATTAAAA 408
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 ATTTCCAATCCGTATGGGGATCCTAATATTCTTGCAGAATTTATAGCTGGACAATTAAAA 240
Query 409 AATCGCGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGAAT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATCGCGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGAAT 300
Query 469 ACAAAAGGAATTCAAGTACAAATTGCA 495
|||||||||||||||||||||||||||
Sbjct 301 ACAAAAGGAATTCAAGTACAAATTGCA 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24093683544
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5