BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG00820.1 Length=279 Score E Sequences producing significant alignments: (Bits) Value Ahg912921 jgi|Araly1|912921|Al_scaffold_0001_3175 261 2e-69 Ahg907854 jgi|Araly1|907854|Al_scaffold_0002_935 261 2e-69 Ahg946681 jgi|Araly1|946681|scaffold_702910.1 241 2e-63 > Ahg912921 jgi|Araly1|912921|Al_scaffold_0001_3175 Length=150 Score = 261 bits (141), Expect = 2e-69 Identities = 147/150 (98%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 130 ATGATTGGCCATACGATCGCTATTCATAATGGAAGGGAACACTTACCCGTTTATATAATA 189 |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 ATGATTGGCCATACTATCGCTATTCATAATGGAAGGGAACACCTACCCGTTTATATAATA 60 Query 190 GATCTTATGGTAGGACATAAATTAGGAGAATTTTCACCTACTATAAATTTTCGAGGACAT 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GATCTTATGGTAGGACATAAATTAGGAGAATTTTCACCTACTATAAATTTTCGAGGACAT 120 Query 250 GCCAAAAATGATAATAGATCTCGTCGTTAA 279 || ||||||||||||||||||||||||||| Sbjct 121 GCGAAAAATGATAATAGATCTCGTCGTTAA 150 > Ahg907854 jgi|Araly1|907854|Al_scaffold_0002_935 Length=150 Score = 261 bits (141), Expect = 2e-69 Identities = 147/150 (98%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 130 ATGATTGGCCATACGATCGCTATTCATAATGGAAGGGAACACTTACCCGTTTATATAATA 189 |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 ATGATTGGCCATACTATCGCTATTCATAATGGAAGGGAACACCTACCCGTTTATATAATA 60 Query 190 GATCTTATGGTAGGACATAAATTAGGAGAATTTTCACCTACTATAAATTTTCGAGGACAT 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GATCTTATGGTAGGACATAAATTAGGAGAATTTTCACCTACTATAAATTTTCGAGGACAT 120 Query 250 GCCAAAAATGATAATAGATCTCGTCGTTAA 279 || ||||||||||||||||||||||||||| Sbjct 121 GCGAAAAATGATAATAGATCTCGTCGTTAA 150 > Ahg946681 jgi|Araly1|946681|scaffold_702910.1 Length=267 Score = 241 bits (130), Expect = 2e-63 Identities = 137/140 (98%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 6 ACGTTCACTaaaaaaaaaCCCTTTTGTAGCAAAGCATTTATTAAGAAAAATAGAGAAGCT 65 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 240 ACGTTCACTAAAAAAACA-CCTTTTGTAGCAAAGCATTTATTAAGAAAAATAGAGAAGCT 182 Query 66 TAATACAAAGGCGGAAAAAGAAATCATAATAACTTGGTCCCGGGCATCCACCATTATACC 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TAATACAAAGGCGGAAAAAGAAATCATAATAACTTGGTCCCGGGCATCCACCATTATACC 122 Query 126 CACAATGATTGGCCATACGA 145 |||||||||||||||| ||| Sbjct 121 CACAATGATTGGCCATGCGA 102 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9729675195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5