BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00920.1

Length=1491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952676 jgi|Araly1|952676|scaffold_900027.1                        209    4e-53
  Ahg915225 jgi|Araly1|915225|Al_scaffold_0009_194                     171    2e-41
  Ahg952437 jgi|Araly1|952437|scaffold_7100007.1                      80.5    3e-14
  Ahg944897 jgi|Araly1|944897|scaffold_701126.1                       69.4    7e-11


> Ahg952676 jgi|Araly1|952676|scaffold_900027.1
Length=10497

 Score =  209 bits (113),  Expect = 4e-53
 Identities = 113/113 (100%), Gaps = 0/113 (0%)
 Strand=Plus/Minus

Query  1379   CCGAAGTCGTTACCTTAACCGCAAGGAGGGGGGTGCCGAAGGCAGGGCTAGTGACTGGAG  1438
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10264  CCGAAGTCGTTACCTTAACCGCAAGGAGGGGGGTGCCGAAGGCAGGGCTAGTGACTGGAG  10205

Query  1439   TGAAGTCGTAACAAGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTTT  1491
              |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  10204  TGAAGTCGTAACAAGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTTT  10152


> Ahg915225 jgi|Araly1|915225|Al_scaffold_0009_194
Length=273

 Score =  171 bits (92),  Expect = 2e-41
 Identities = 92/92 (100%), Gaps = 0/92 (0%)
 Strand=Plus/Plus

Query  1362  ATGGGAGCTGGCCATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGGGGGTGCCGAAGGC  1421
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     ATGGGAGCTGGCCATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGGGGGTGCCGAAGGC  60

Query  1422  AGGGCTAGTGACTGGAGTGAAGTCGTAACAAG  1453
             ||||||||||||||||||||||||||||||||
Sbjct  61    AGGGCTAGTGACTGGAGTGAAGTCGTAACAAG  92


> Ahg952437 jgi|Araly1|952437|scaffold_7100007.1
Length=361

 Score = 80.5 bits (43),  Expect = 3e-14
 Identities = 43/43 (100%), Gaps = 0/43 (0%)
 Strand=Plus/Minus

Query  779  CGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTA  821
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  224  CGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTA  182


> Ahg944897 jgi|Araly1|944897|scaffold_701126.1
Length=328

 Score = 69.4 bits (37),  Expect = 7e-11
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  17   ATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAAC  53
            |||||||||||||||||||||||||||||||||||||
Sbjct  292  ATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAAC  328



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55802208925


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5