BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG00920.1 Length=1491 Score E Sequences producing significant alignments: (Bits) Value Ahg952676 jgi|Araly1|952676|scaffold_900027.1 209 4e-53 Ahg915225 jgi|Araly1|915225|Al_scaffold_0009_194 171 2e-41 Ahg952437 jgi|Araly1|952437|scaffold_7100007.1 80.5 3e-14 Ahg944897 jgi|Araly1|944897|scaffold_701126.1 69.4 7e-11 > Ahg952676 jgi|Araly1|952676|scaffold_900027.1 Length=10497 Score = 209 bits (113), Expect = 4e-53 Identities = 113/113 (100%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1379 CCGAAGTCGTTACCTTAACCGCAAGGAGGGGGGTGCCGAAGGCAGGGCTAGTGACTGGAG 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10264 CCGAAGTCGTTACCTTAACCGCAAGGAGGGGGGTGCCGAAGGCAGGGCTAGTGACTGGAG 10205 Query 1439 TGAAGTCGTAACAAGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTTT 1491 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10204 TGAAGTCGTAACAAGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTTT 10152 > Ahg915225 jgi|Araly1|915225|Al_scaffold_0009_194 Length=273 Score = 171 bits (92), Expect = 2e-41 Identities = 92/92 (100%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1362 ATGGGAGCTGGCCATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGGGGGTGCCGAAGGC 1421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAGCTGGCCATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGGGGGTGCCGAAGGC 60 Query 1422 AGGGCTAGTGACTGGAGTGAAGTCGTAACAAG 1453 |||||||||||||||||||||||||||||||| Sbjct 61 AGGGCTAGTGACTGGAGTGAAGTCGTAACAAG 92 > Ahg952437 jgi|Araly1|952437|scaffold_7100007.1 Length=361 Score = 80.5 bits (43), Expect = 3e-14 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 779 CGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTA 821 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 224 CGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTA 182 > Ahg944897 jgi|Araly1|944897|scaffold_701126.1 Length=328 Score = 69.4 bits (37), Expect = 7e-11 Identities = 37/37 (100%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 17 ATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAAC 53 ||||||||||||||||||||||||||||||||||||| Sbjct 292 ATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAAC 328 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55802208925 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5