BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG01270.1
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493595 jgi|Araly1|493595|fgenesh2_kg.7__3028__ATCG01270.1 390 2e-108
Ahg473737 jgi|Araly1|473737|fgenesh2_kg.1__3691__ATCG01270.1 390 2e-108
Ahg497142 jgi|Araly1|497142|fgenesh2_kg.9__107__ATCG00870.1 385 9e-107
> Ahg493595 jgi|Araly1|493595|fgenesh2_kg.7__3028__ATCG01270.1
Length=217
Score = 390 bits (211), Expect = 2e-108
Identities = 215/217 (99%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 16 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGTATGGATGGTATGAACTGCCTAAA 75
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGGATGGATGGTATGAACTGCCTAAA 60
Query 76 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCaaaaaaaTTTCCA 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCAAAAAAATTTCCA 120
Query 136 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATTAAATTGTTG 195
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATGAAATTGTTG 180
Query 196 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 232
|||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 217
> Ahg473737 jgi|Araly1|473737|fgenesh2_kg.1__3691__ATCG01270.1
Length=217
Score = 390 bits (211), Expect = 2e-108
Identities = 215/217 (99%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 16 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGTATGGATGGTATGAACTGCCTAAA 75
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGGATGGATGGTATGAACTGCCTAAA 60
Query 76 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCaaaaaaaTTTCCA 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCAAAAAAATTTCCA 120
Query 136 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATTAAATTGTTG 195
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATGAAATTGTTG 180
Query 196 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 232
|||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 217
> Ahg497142 jgi|Araly1|497142|fgenesh2_kg.9__107__ATCG00870.1
Length=217
Score = 385 bits (208), Expect = 9e-107
Identities = 214/217 (99%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 16 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGTATGGATGGTATGAACTGCCTAAA 75
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 CATGGAAGAATTGAAATCTTAGATCAAAACACTATGGATGGATGGTATGAACTGCCTAAA 60
Query 76 CAAGAATTCTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCaaaaaaaTTTCCA 135
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAGAATTTTTGAACAGCGAACAACCGGAGCTATTACTCACTACATCAAAAAAATTTCCA 120
Query 136 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATTAAATTGTTG 195
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TTAATAAAAGATGGAAATCCATTGGAAAATCAAAAATACGCATGTCGGATGAAATTGTTG 180
Query 196 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 232
|||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGCTATCTGTTCCAATAACGAATCAACTGAATAACT 217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8057723071
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5