BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG01300.1
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933369 jgi|Araly1|933369|scaffold_401357.1 521 8e-148
Ahg907852 jgi|Araly1|907852|Al_scaffold_0002_933 521 8e-148
Ahg315565 jgi|Araly1|315565|fgenesh1_pm.C_scaffold_2000598 516 4e-146
Ahg473318 jgi|Araly1|473318|fgenesh2_kg.1__3272__ATCG01300.1 503 3e-142
> Ahg933369 jgi|Araly1|933369|scaffold_401357.1
Length=868
Score = 521 bits (282), Expect = 8e-148
Identities = 282/282 (100%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 120
Query 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 180
Query 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 240
Query 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 300
Query 241 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 342
> Ahg907852 jgi|Araly1|907852|Al_scaffold_0002_933
Length=282
Score = 521 bits (282), Expect = 8e-148
Identities = 282/282 (100%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60
Query 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120
Query 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180
Query 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240
Query 241 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282
> Ahg315565 jgi|Araly1|315565|fgenesh1_pm.C_scaffold_2000598
Length=282
Score = 516 bits (279), Expect = 4e-146
Identities = 281/282 (99%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60
Query 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120
Query 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180
Query 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240
Query 241 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282
||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 CCGGGTTATTCTATTCCACCTCTTAGAAATAAAAGAACTTAA 282
> Ahg473318 jgi|Araly1|473318|fgenesh2_kg.1__3272__ATCG01300.1
Length=279
Score = 503 bits (272), Expect = 3e-142
Identities = 277/279 (99%), Gaps = 1/279 (0%)
Strand=Plus/Plus
Query 5 ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATT-GGGGAAAAATCAA 63
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGGAAAAATCAA 60
Query 64 TATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTC 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATACTTTTAATGTTGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTC 120
Query 124 TTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAAAGA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAAAGA 180
Query 184 ATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCG 240
Query 244 GGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282
|||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9844141962
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5