BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG01310.1
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907853 jgi|Araly1|907853|Al_scaffold_0002_934 1507 0.0
Ahg315564 jgi|Araly1|315564|fgenesh1_pm.C_scaffold_2000597 1387 0.0
Ahg473319 jgi|Araly1|473319|fgenesh2_kg.1__3273__ATCG00830.1 737 0.0
Ahg933369 jgi|Araly1|933369|scaffold_401357.1 712 0.0
> Ahg907853 jgi|Araly1|907853|Al_scaffold_0002_934
Length=825
Score = 1507 bits (816), Expect = 0.0
Identities = 822/825 (99%), Gaps = 0/825 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
Query 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 120
Query 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180
Query 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240
Query 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300
Query 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360
Query 361 CCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACAT 420
Query 421 AATATAGAAATCACACTTGGAAGGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCG 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 AATATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCG 480
Query 481 AAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGT 540
Query 541 TTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAG 600
Query 601 AAAAGTTTGGGTAGAGCCGGATCGAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGA 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 AAAAGTTTGGGTAGAGCCGGATCAAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGA 660
Query 661 GTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGT 720
Query 721 AGaaaaaaaCCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGaaaaagg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGAAAAAAACCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGAAAAAGG 780
Query 781 aaaaaaTATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG 825
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAAAAATATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG 825
> Ahg315564 jgi|Araly1|315564|fgenesh1_pm.C_scaffold_2000597
Length=810
Score = 1387 bits (751), Expect = 0.0
Identities = 803/825 (97%), Gaps = 15/825 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
Query 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 120
Query 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CGTAATGCCAAAGGAATAATTACCGCAAGGCATAAAGGGGGAGGTCATAAGCGTCTATAC 180
Query 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240
Query 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATAGTGAGAAGAGA 300
Query 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTTTGGTACAGAAGTT 360
Query 361 CCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACAT 420
|||||||||||||||||||||||||| | | || | ||||||||||||||
Sbjct 361 CCTATAAAAATGGGAAATGCCCTACC--T------T-TG-----A-GCACGGCCATACAT 405
Query 421 AATATAGAAATCACACTTGGAAGGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCG 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 406 AATATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCG 465
Query 481 AAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGT 525
Query 541 TTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAG 585
Query 601 AAAAGTTTGGGTAGAGCCGGATCGAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGA 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 586 AAAAGTTTGGGTAGAGCCGGATCAAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGA 645
Query 661 GTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGT 705
Query 721 AGaaaaaaaCCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGaaaaagg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 AGAAAAAAACCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGAAAAAGG 765
Query 781 aaaaaaTATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG 825
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 AAAAAATATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG 810
> Ahg473319 jgi|Araly1|473319|fgenesh2_kg.1__3273__ATCG00830.1
Length=735
Score = 737 bits (399), Expect = 0.0
Identities = 408/412 (99%), Gaps = 1/412 (0%)
Strand=Plus/Plus
Query 391 ACCGATATGCCCTTAGGCACGGCCATACATAATATAGAAATCACACTTGGAAGGGGTGGA 450
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 325 ACCGATATGCCCTTAGGCACGGCCATACATAATATAGAAATCACACTTGGAAAGGGTGGA 384
Query 451 CAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCC 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 CAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCC 444
Query 511 ACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTC 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTC 504
Query 571 GGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCGAAATGT 630
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 505 GGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCAAAATGT 564
Query 631 TGGCTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTCGACCATCCCCAT 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TGGCTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTCGACCATCCCCAT 624
Query 691 GGAGGTGGTGAAGGGAGGGCTCCAATTGGTAGaaaaaaaCCCGTAACCCCCTGGGGTTAT 750
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 625 GGAGGTGGTGAAGGGAGGGCTCCAATTGGTAGAAAAAAACCCGTAAACCCCTGGGGTTAT 684
Query 751 CCTGCACTTGGAAGAAGAACTAGaaaaaggaaaaaaTATAGTGAGACTTTGA 802
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 685 CCTGCACTTGGAAGAAGAACTAGAAAA-GGAAAAAATATAGTGAGACTTTGA 735
Score = 355 bits (192), Expect = 3e-97
Identities = 192/192 (100%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 158 GGGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGAAATGCAAAAGACATAT 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GGGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGAAATGCAAAAGACATAT 181
Query 218 ATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATAC 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATAC 241
Query 278 ACTATGGGGATGGTGAGAAGAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ACTATGGGGATGGTGAGAAGAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATA 301
Query 338 CCATTGTTTCTG 349
||||||||||||
Sbjct 302 CCATTGTTTCTG 313
Score = 209 bits (113), Expect = 2e-53
Identities = 119/122 (98%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCTTAGACGGT 60
Query 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 120
Query 121 CG 122
||
Sbjct 121 CG 122
> Ahg933369 jgi|Araly1|933369|scaffold_401357.1
Length=868
Score = 712 bits (385), Expect = 0.0
Identities = 389/391 (99%), Gaps = 0/391 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 420
Query 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 480
Query 121 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATAC 540
Query 181 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAA 600
Query 241 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGA 660
Query 301 TATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TATATTTTACATCCTAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTT 720
Query 361 CCTATAAAAATGGGAAATGCCCTACCTTTGA 391
|||||||||||||||||||||||||||||||
Sbjct 721 CCTATAAAAATGGGAAATGCCCTACCTTTGA 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30498333600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5