BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00516.1

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930994 jgi|Araly1|930994|scaffold_303451.1                        110    8e-24
  Ahg930996 jgi|Araly1|930996|scaffold_303453.1                       93.5    8e-19


> Ahg930994 jgi|Araly1|930994|scaffold_303451.1
Length=388

 Score =  110 bits (59),  Expect = 8e-24
 Identities = 59/59 (100%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  260  TCTTCAATGGGGTCTGCTCttttttttttGGGAGAGTATGCCAATATGATCTTAATGAG  318
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  97   TCTTCAATGGGGTCTGCTCTTTTTTTTTTGGGAGAGTATGCCAATATGATCTTAATGAG  155


> Ahg930996 jgi|Araly1|930996|scaffold_303453.1
Length=473

 Score = 93.5 bits (50),  Expect = 8e-19
 Identities = 54/56 (96%), Gaps = 0/56 (0%)
 Strand=Plus/Minus

Query  1   TGGTCCATGCACATTGTTCTTTCCAGGAGGTTGGCCGCCTATCCTAGATCTTCCCA  56
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  56  TGGTCTATGCACATTGTTCTTTCCAGGAGGTTGGCTGCCTATCCTAGATCTTCCCA  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11217743166


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5