BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATMG00516.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value Ahg930994 jgi|Araly1|930994|scaffold_303451.1 110 8e-24 Ahg930996 jgi|Araly1|930996|scaffold_303453.1 93.5 8e-19 > Ahg930994 jgi|Araly1|930994|scaffold_303451.1 Length=388 Score = 110 bits (59), Expect = 8e-24 Identities = 59/59 (100%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 260 TCTTCAATGGGGTCTGCTCttttttttttGGGAGAGTATGCCAATATGATCTTAATGAG 318 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 97 TCTTCAATGGGGTCTGCTCTTTTTTTTTTGGGAGAGTATGCCAATATGATCTTAATGAG 155 > Ahg930996 jgi|Araly1|930996|scaffold_303453.1 Length=473 Score = 93.5 bits (50), Expect = 8e-19 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 1 TGGTCCATGCACATTGTTCTTTCCAGGAGGTTGGCCGCCTATCCTAGATCTTCCCA 56 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 56 TGGTCTATGCACATTGTTCTTTCCAGGAGGTTGGCTGCCTATCCTAGATCTTCCCA 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11217743166 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5