Detail


ID : Ahg311880

Blast(Query):  A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|311880|fgenesh1_pm.C_scaffold_1000660
Sequence
ATGTACAGCA ATTTCAAAGA ACAAGCGATC GAGTACGTGA AGCAAGCTGT TCAAGAGGAC AATGCTGGTA ACTACAACAA AGCTTTCCCT TTGTACATGA ACGCTCTTGA ATACTTCAAA ACCCATCTCA AATATGAGAA GAACCCTAAG ATCAGAGATA CTATCAGCGA CAAATTCAAC GAGTATATCC TTCGTGCTGA GGAGATTCGT GCGGTTTTAG ATGAAGTTCG ATCGGGGACA GGATCTAATG GCGACGCAGC GGTTGCTACG AAGCCCAAAG ACGGAGGAGA TGGAGCAGAA TCGAAGCTTC GAGCTGGGTT AAACTCTGCT ATTGTTAGGG AAAAGCCTAA CGTTAAGTGC CAAAGAAGCG TTAAAGGAAG CTGTTATTTT GCCTGTCCAA GGCGGCCATG GCGAGCTTTT CTGCTCTACG GGCCTCCTGG AACTGGTAAA TCGTACTTGG CTAAGGCTGT TGCTACTGAA GCAGACTCTA CGTTTTTCAG TGTGTCTTCA TCAGACTTGG TCTCGAAGTG GATGGGTGAA AGTGAAAAGC TAGTATCGAA CCTTTTTGAG ATGGCTCGTG AGAGTGCACC GTCAATTATT TTTGTCGATG AGATAGATTC TTTGTGTGGT CAACGTGGAG AAGGCAATGA GAGTGAAGCT TCAAGACGTA TTAAAACAGA GCTTCTTGTG CAGATGCAGG GTGTTGGACA CAATGATGAG AAAGTCCTTG TACTGGCAGC AACAAATACA CCGTATGCTC TTGATCAGGC TATTCGGCGA CGTTTTGATA AGCGTATCTA TATCCCTCTA CCGGATGTGC ATTTGGGAGA TACTCCTCAT AATTTGAATG AAGCTGATTT TGAATATTTA GCTCGCAGGA CAGAGGGATT CTCTGGTTCG GATGTGGCTG TTTGTGTCAA GGATGTTCTG TTTGAACCTG TTCGGAAAAC GCAAGATGTC ATGTTCTTTT TCAGTGCTCC TGATGGTACG TGGATACCAT GTGGGCCTAA ACAACCTGGT GCCATTCAGA TTACAATGCA GGATTTAGCA GAAAAAGGGC TCGCTGAAAA GATTATTCCG CCGCCTATTG CGAGAACGGA TTTTGAGAAG GTTCTAGCAA GACAGCGACC GACAGTGAGC AAGACTGATC TTGAGGTCCA TGAGAGATTC ACAAAGAAGT TTGGAGAGGA AGGTTGA
Length1197
Protein Sequence
Protein Residue
Map Locationscaffold_1: 2945072.. 2946571
Download Sequence
A.thaliana
AGI-codeAT2G27600.1
DescriptionAAA-type ATPase family protein
TAIR curator summaryEncodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.
Alias[ATSKD1][SKD1][VPS4][SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1][VACUOLAR PROTEIN SORTING 4]
Gene coexpression
MR
MR Locus Description
9.48683 Ahg944028
15.5885 Ahg925319 Ras-related small GTP-binding family protein
15.6205 Ahg943726
20.1494 Ahg931830
20.4939 Ahg903118
22.8473 Ahg927973
33 Ahg891034 histone H2A 4
33.7787 Ahg946895
38.8587 Virus1427
56.4801 Ahg330701 alpha/beta-Hydrolases superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression