Detail


ID : Ahg314895

Blast(Query):  A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|314895|fgenesh1_pm.C_scaffold_1003675
Sequence
ATGAAAACCT TTGAAAACTG GAGGAAGACA ATTATGTTAC TTTGCTTTGC TGCTTTCGCT ATTGATCCTT TGTTTCTCTT TATCCCTGTG ATTGATTCTC ATAGATTCTG CTTTACTTAT GACAAGAAGC TAGGGCTAGC AGCTTGTGTC ATTCGTACTT TTATGGACTC ATTCTATGTA ATTCACATCA TTTTCCGTTC AATAACCGAG CTCATTGCTC CTCGTTCACA AGTATCTTTA AGAGGCGAGA TAATTATGCA TTCCAAGGCT ACAAGGAAAA AGCGCCTCAT CTTTCGCTTC ATGGTTGACA TTGCTTCAAT TCTCCCCATT CCTCATCAAA AGTCTGCCTT GCTGGTGTCA AAGGACATAT TAAAAAAGGT TATAATATGT CAATATATAC CAAGAATCCT CTGTATCTAT CTGCTTTTCC AAGAAGTGAC AAAGGCCTCT GGTACGGTAG TAGAAACAAA GTGGATTGGA GCTGCTTTAA ACCTTTTCCT CTACATGCTT CCGAGTTATG TGTTTGGGGG TTTCTGGTAC TTCAATGCAA TACAAAGGGA GAACTTATGC TGGCATGATG TGTGTGCTAG AACACCTGGA TGCAATGTCA TGAATCTATA TTGTGCACGA GGTAGCGAAG ACAACAATCG TTTTCTGAAC AATTCATGCC CATTAATTGA CCCTGGCCAA ATCACAAACT CCACAGTCTT CAATTTTGGT ATGTATATTG ATGCATTGAA GTCAGGGGTG GTAGAGTCCA GGTATTTTCC AAGGAAGTTC TTCTACTGCT TTTGGTGGGG TCTTCGAAAT CTTAGTGCTT TGGGTCAAAA CCTGGAGACA AGCAACTCTG TAGAGGAGAT CGTGTTTGTC ATAATCATCT GTATACTTGG TTTACTCTTG TTTGCTTTAC TCATTGGAAA CGTTCAGAAG TACTTGCAAT CGACTACGAT CAAAGTAGAT GAAATGGAGG AGAGAAAAAG AGACATAGAA AAGTGGATGT CTTATCGGAA CCTACCCGAC GATCTCAAGC AACGCATTAG GAAATACGGG GAATACACAT GGAAACAAAC TAGAGGCATC AAAGAGGAAG CTCTTCTTCG TAGCCTTCCT ATAGACCTCA GACTCGAAAC CAAACGACAT CTTTACCTGA ATCTATTAAA GGGTGTTCCT TTGTTTGAGG GCATAGATGA TGGTTGGTTA CTATCAGCAA TGTGCAACCG GGTGAAGTAT GTGTTCTACT CGGCAGATAG CTACATAGTA AAAGAGGGTG ACCCAATGGA GGAAATGCTG ATTATAACAA AAGGAAAACT AAAAAGTACA ACTAGGTCTC ATGAAATAGG TGAAGAACTA AAAGCAGGTG ACATATGTGG AGAACTTCTC TTTAATAGTT CTTCCCTTCC CACCTCAACC AGAACTATAA TAACTCTTAC CGAAGTTGAA GGTTTCACTC TCTCGCCTGA TGATGTCAAG TTTGTAGCTT CTCATTTTAA TCACCTTCAA AGCGTGATAC ACAAACAAAT GAGCAGGCAA GGCTTAGAAA CCGAAATCAT CAGCAGCATG CGTCATACAG GCAACATGGA AGGAATATGT GAGAAGGAAG CTTTCTAA
Length1608
Protein Sequence
Protein Residue
Map Locationscaffold_1: 30387312.. 30389832
Download Sequence
A.thaliana
AGI-codeAT2G46450.1
Descriptioncyclic nucleotide-gated channel 12
TAIR curator summaryMember of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.
Alias[ATCNGC12][CNGC12][cyclic nucleotide-gated channel 12]
Gene coexpression
MR
MR Locus Description
2 Ahg894745 NAD(P)-binding Rossmann-fold superfamily protein
3.16228 Ahg942827
4.89898 Ahg920647
7.74597 Ahg941329 SAUR-like auxin-responsive protein family
7.74597 Ahg471938 SAUR-like auxin-responsive protein family
11.6189 Ahg950622 DNA polymerase V family
11.6189 Ahg922061 Protein of unknown function (DUF1223)
13.8564 Ahg474427 Legume lectin family protein
16.4924 Ahg923038
17.4356 Ahg939543
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression