| Annotation |
|---|
| Description | jgi|Araly1|317213|fgenesh1_pm.C_scaffold_3000229 |
| Sequence |
ATGGAATCGA TCGGCGACGA CGATGAGCTC AGTAGCAAAA CAGTTTCTCT TCGGAGAAGA ATCTCGTTTA CGATTCTTCT TCTTCTTCTT CTTCTCTTAA TCTCCTTGAG TACGAGGGTC TCTGGTTCGA TTGACGAGTC TGGAAGAAGA GTGATTGAAG CGAGAACTGG GCAAGACTTG ATTTGGGTTG TTCAGCTATC TGATCTCCAT TTCAGTGTTC ATCATCCCGA GAGAGCCACT GATTTCAAAA ACAGTGTGGG CCCTGCTCTG TCTCTTATCA ACCCTTCTCT CGTCCTCATC ACTGGAGATC TCACAGATGG GAAAAGCAAA GACATGTTAA CAATGAAGCT AAATGAAGAT GAGTGGTTAG AATACGAGAG TGTGATGCAA GATGTTGTGG AAAGAAGTGG GCTTAATAAG AGCATATTTT ATGATCTCAG GGGTAACCAT GACAACTTTG GTGTTCCGGC TGTTGGTTCA TCTGTTGATT TCTTCTCAAA GTATAGCATC AATGCACAGA TGGGAAGGAA AGGAAATGTT AACACCATAA CTGTTGAGAC TAGCGAACGT AAACATCTGT TTGTCGGTAT TGACACCACA ATGCATATTG GATTACGCGG CCCAACAAAT CTCTTTGGGC ATCCAACTGA TGAACTTTTG AGCTCACTCG ACTCACACCT GTCGCAATGG GATAACCAAT CAGCAAAACC TGTTGCAAAA ATATCATTTG GGCATTTCCC ATTGTCATTC ACAGCGCTGT CACATTCTCA AAAGAGCCTT AAAGATGTTT TTCTGAAGCA CTCCATCTCA GCTTATTTGT GTGGCCATCT ACACTCAAAG TTTGGCAAGA ATCTTAAAAG ACATCACCAC TCTGGTGGTA TCAGTTTATC AGATAATGAC TTGTTTCAGC TGAATATGAG GCAGAGTGGT GCTGAAAGTA CTTCGAACTG CTCATTTGGA GCCTTACCAG CTGCAGAATT CTGGGAATGG GAGATGGGTG ACTGGAGAAA AAACAGAGCA ATGCGGATCA TGGCCATTGA TAGGGGTCAT GTTTCATATG TTGATCTTGA CTTCAAGTCA AAATCCCTAA GGACTATCAT ATTACCGACC TTTCCATTAG ATTCACGTTT TATGTCAACA TCCTTTGCAC GTCACAAATA CGAATGCCAA CATATGATCT CATCATCCTA TGACACAATA AGAGCCATTG TCTTTTCTCA TTCCCTGATT GTGGAAGTTG TAGCTAGAGT TTATGACTCA AGCCCTGGAT TTGACAACCT GGTCATGGAA GCTCCAATGA GAAAACTTGG AGGCGATTCT TCTTCTTCCG GGGCAACATT ATTTTCACTT CCATGGAATT ATAGGGCCTT TGAAGATCCC TTACCTGATA GATTTTGGCT GCAAATAGAA GTCACTGACA TCAAAGGCAG ATTAACTTTA TCAGAAATGC GACCATTTTC CATCAATGGT CTAAGCTCTA AAGTCTCATG GACATGGAAT GAGTTCCGTG TCATGGGTTG CCAATGGGCA GCATTATATT ACCCGATTCT TTGGGCTGCT ATGTATAGTT TGTTTCTCGT TTTTCTTATC CCCAAATGCA TCATCATCGT TTTCAAGAAG CAGTACACTC TCAAGAAGTT CATTGCCAAG AGAGGACCAA TCACACTTGT ACTGTGGATT CTCCAAGACC TCTGCAGAAT GCCTGTGGTT TGGTTCGGTT ACATGGCATA CTTGTTGTAT CTGATATTCT TTCCTTGGTT CTCCGGTGAA GTGTATACTG ATTCCGGAAA CAGAACATAC ATGACTATTA TGGGATGGGT GGTGACGAGC TCAGGCGCAG ATAGGAAACA TGAATACATT GGACAACCTG ATGTAATGGT TCTGGTGATC CCACATGTGG TCTTTGTTGT TATCCCCAGT GTCTTGGTTG TGTGTTGTTT GGTTGCTGAG AGAGAAATCT ACAAAGATCA CATTCGAACC GTCTCTGGAA AGAAAGAGGA TGATCATGAC CGGGGAAGGA AGAAGAGATC ACAACGCCGC TCGCTGTTAT TCTCTAACAG AAGACTGTTT CGTAAATCAC TCTTGGTGGC TTCATTAGCT CTATATTGGA AGCATTTCAA GAATTGCTGG GCATTAGCTA GAGCTTATGA GATGAATATG GTTCATTTTC CAGGGTACAG TCTTACCACT GATCAAGTCT CTGCATCTCC TCTACATTTT GCTAGAAGTT ATCAGGTAGA GGCACTTGAG AAAGCTATCA AGCACAACAC TATTGTCTTC TTTGAGACTG GTTCTGGCAA GACCCTTATT GCCATTATGC TTCTTCGTAG CTACTCCTAC CTTTTCCGCA AGCCTTCACC CTGCTTCTGT GTCTTCTTGG TTCCTCAAGT GGTTCTTGTC ACTCAGCAAG CAGAAGCCCT GAAGATGCAT ACTGATCTAC AAGTGGTGCA GGTTCTGGTG ATGACCCCTG CCATTTTGCT CGATGCATTG AGGCATAGTT TTCTGAACTT GAGCATGATC AAGGTTCTAA TAGTTGATGA GTGTCATCAT GCTGGGGGAA AGCACCCCTA TGCTTGTATC ATGAGGGTCT ATACCTGTGA GAATGAGTCT GTGCTGGCTG GGTTTGTCCC CTTTTCTACA CCAAGGTTCA AGTATTACCA GCACATGGGG ATACCAAGTT CCAAACGAGC AAGTTTGGTA GAGAAGCTAG AAAAACTAAT GATAAAGCAT CGCTTATCCC TTGCAACCTT GGATCTCAAA CCCTCTACTG TTGATTCTAT AGAGAAGAGA CTGTCGAGGA TAAGTTCAAC TCTAACATAT TGTTTGGATG ATCTCGGAAT TTTGCTGGCG CAGAAGGCTG CTCAGTCATT GTCAGCCAGT CAGAATGACT TTTTCTTGTG GGGGGAACTA AATATGTTTA GCGTGACCTT GGTAAAAAAG TTCTGTTCTG ATGCTTCACA GGCGTTTTTG GCTGACATAC CTAATGGTCT TAGTTGGAGT ATTGCTAACA TAAATGGAAA CGTGGAGGCA GGTCTCCTAA CATCAAAAAC AGTCTGCCTG GTTGAGACTC TTCTTGGTTA TAGCTCACTG GAGAACATAC GGTGCATCAT TTTTGTGGAT AGGGTGATAA CAGCCATTGT TCTGGAATCT CTGTTGGCTG AGATTCTTCC AAACTGTAAT AACTGGAAAA CCAAGTACGT TGCTGGGAAT AACTCTGGTC TGCAAAATCA AACTCGGAAG AAGCAAAATG AAATTGTGGA AGACTTCCGG AGAGGCTTGG TAAACATCAT TGTAGCAACA TCTATTCTAG AGGAGGGACT AGATGTTCAA AGTTGCAATC TGGTTATCAG ATTTGATCCT GCATCCAACA TTTGCAGTTT CATACAGTCT CGTGGGCGTG CCAGAATGCA AAATTCAGAT TATTTGATGA TGGTGGAAAG CGGAGATCTG TTAACACAAT CTCGGTTAAA AAAATATCTT TCTGGTGGGA AAAGAATGCG TGAAGAGTCT TTGCATCATT CTCTTGTTCC CTGTCCACCT CTTCCAGATG ATTCAGACGA ACTATTCTTC CGTGTCGAAA GTACTGGCGC AACTGTAACT CTTAGCTCAA GCGTCAGCTT AATATATCAT TACTGCTCAA GGCTTCCTTC AGATGAGTAC TTCAAACCTG CTCCTAGATT TGATGTAAAC AAGGATCAGG GGAGTTGTAC CCTTTACCTT CCTAAGAGCT GCCCAGTAAA AGAAGTTAAA GCTCAAGCAA ATAATAAAGT GTTAAAACAA ACTGTCTGTC TTGAAGCTTG CATTCAACTG CACAAAGTTG GAGCTCTAAG TGATCATCTT GTGCCTGACA TGGTTCTGGC GGAAACTGTC GCACAAAAAC TCGAGAAAAT CCAATATAAC CCAGAGCAGC CATGTTACTT CCCCCCAGAG CTAGTCTCCC AGTTTTCAGT ACAGCCGGAG ACAACATACC ACTTCTACCT AATAAGAATG AAGCCAAACT CTCAAAGAAA TTTTCATTTA AATGATGTTT TACTAGGCAC CAGAGTTGTG CTTGAAGATG ACATTGGGAA CACAGGCTTC CGGTTGGAAG ATCATAAGGG TACAATAGCT GTGACATTGA GTTATGTGGG AGCTTTTCAC CTTACACAAG AGGAGGTCCT TTTGTGTAGA AGATTTCAGA TAACTCTATT CCGAGTTCTT TTAGATCACA GTGTGAAAAA TTTGATGGAG GCATTGAATG GATTGCTTCT CAGAGACGGG ATAGCACTTG ATTATCTACT AGTTCCATCC ACTCATTCAC ATGAAACATC TCCTATTGAT TGGGAAGTGA TCAGATCCGT GAATCTAACT TGTCATGAAT CTTTGGAAAA ACACGTAAAT TGTTCTATCA ACGGCGCTTC TCGTATTCTA CACACAAAAG ACGGCTTGTT TTGTACTTGT GTCGTACAAA ATGCATTGGT TTACACACCA CATAATGGAT ACTTCTACTG CACGAAAGGC GTTCTCAACA ATATAAATGC AAATTCATTC TTGACGAAGA GAAATTCTGG CGATCAGACT TACATAGAGT ACTATGAGGA ACGGCATGGG ATTCAATTAA ATTTTGTGGA TGAACCTCTT CTGAATGGAA GACACATTTT CACGTTGCAT AATTATCTTC ACATGACCAA GAAGAAAAAG GAGAAAGAGC ATGACAAAGA GTTTGTTGAA CTACCTCCTG AACTGTGTCA TGTCATTTTG TCCCCAATAT CAGTTGATGT GATCTATTCG TATACTTTCA TCCCATCTGT TATGCAACGC ATTGAATCTT TGCTTATTGC ATACAACCTG AAGAAGAGCA TCCCAAAAGT CAATATTCCA ACCATCAAGG TTTTGGAAGC TATAACGACA AAGAAGTGCC AAGATCAGTT TCACTTGGAA TCACTAGAAA CTCTTGGTGA CTCTTTTCTA AAATATGCTG TTTGTCAGCA ACTATTCCAA CACTGCCATA CTCACCATGA GGGTCTTCTT AGCGCGAAGA AAGATGGAAT GATTTCAAAT GTCATGCTCT GCCAATTTGG ATGTCAGCAG AAACTTCAGG GATTTATCCG CAATGAGTGT TTTGAACCCA AAGGTTGGAT GGTTCCTGGT CAACATTCTG CAGCTTATGC ACTTGTAAAT GATACCCTAC CCCAGTCTAG AAACATATAC GTTGCTAGCA GGAGGAATTT GAAACGCAAG AGTGTGGCTG ATGTTGTAGA ATCACTAATT GGAGCATATC TCAGTGAGGG AGGTGAACTT GGAGCTTTGA TGTTCATGAA TTGGGTTGGT ATAAAGGTCG ATTTCACTAC TACGAAGATC CAGAGAGAGT CCCCAATACA AGCAGAGAAG CTTGTGAATG TAGGTTATAT GGAGTCACTG TTGAATTACA GTTTTGAGGA TAAGTCTCTT CTAGTTGAAG CATTGACTCA TGGTTCATAC ATGATGCCTG AAATTCCAAG ATGCTATCAG CGGTTGGAGT TCCTCGGTGA CTCGGTATTG GATTATCTCA TAACCAAGCA TCTATACGAC AAATATCCTT GTCTGTCTCC TGGACTATTA ACTGACATGC GATCAGCTTC TGTTAACAAT GAATGTTATG CTCTAGTGGC GGTTAAAGAA AATCTGCACA AACACATCCT GCACGCCTCT CATGATCTCC ACAAGCACAT CTCTAGAACA GTCAGTGAGT TCGAACAGTC TTCTTTGCAA TCCACTTTCG GATGGGAATC CGATATATCT TTTCCTAAGG TTCTTGGAGA TGTGATAGAA TCTTTAGCAG GCGCGATATT TGTTGACTCA GGTTACAACA AGGAAGTAGT GTTTGCGAGT ATTAAACCAC TCTTGGGTTG TATGATAACT CCAGAGACTG TCAAGTTGCA TCCTGTGAGA GAGTTGACAG AATTATGTCA GAAATCGCAG TTCGAGTTGA GTAAAGCTAG AGATTTCGAT TATTTCACGG TTGAGGTGAA AGCTAAGGAA ATGAGTTTTG CTCACACAGC AAAGGCCTCT GATAAGAAAA TGGCCAAGAA ATTGGCTTAC AAAGAAGTCT TGAACTTACT TAAGAAGGGC CTTGCCTCCT AA |
| Length | 6102 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 929049.. 941500 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G03300.1 |
| Description | dicer-like 2 |
| TAIR curator summary | Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants. Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs. |
| Alias | [ATDCL2][DCL2][DICER-LIKE 2][dicer-like 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg471723 | CASC3/Barentsz eIF4AIII binding |
| 1.73205 |
Ahg949533 | Protein of Unknown Function (DUF239) |
| 3.4641 |
Ahg337067 | AAA-type ATPase family protein |
| 3.74166 |
Ahg493698 | auxin response factor 8 |
| 6.245 |
Ahg943542 | Protein kinase superfamily protein |
| 7.48331 |
Ahg475111 | O-fucosyltransferase family protein |
| 7.74597 |
Ahg471233 | transmembrane nine 1 |
| 7.74597 |
Ahg471760 | centromere protein C |
| 8 |
Ahg485584 | Dihydrolipoamide acetyltransferase, long form protein |
| 10.198 |
Ahg495914 | O-Glycosyl hydrolases family 17 protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|