| Annotation |
|---|
| Description | jgi|Araly1|319546|fgenesh1_pm.C_scaffold_3002562 |
| Sequence |
ATGCATCATT TCGTCCCTGA CTTCGATACA GATGATGATT ATGTCAACAA CAACCATAAT AATTCATCTT TGAATCATCT TCCTAGAAAA TCCATTACTA CTATGGGTGA AGATGATGAT GATCTTATGG AGCTTTTATG GCAGAACGGT CAAGTTGTTG TTCAAAACCA GAGACTTCAC AATAACAATA CGAAGAAACC TTCTTCTTCT TCTTTTCCGA CGAAGCTTCT TCAAGCTCCG ATTCCTCCTT CTATGGATAA TCATCATCAG CAGCAGCAAC CGTCGACAGA TCAGAATCTT TTTATTCAAG AAGATGAAAT GACTTCTTGG CTTCATTATC CTCTTCGTGA CGATGATTTC TGCTCCGATC TCCTCTTCTC CGCCGCACCA ACTCCTCCCT GTGCGACGAG TCAGGTGGTC ACCGCCGTAA GACCGCCAGT GCCAGTACCG TCTTCGTCGA ATGAGTCGAG GCCACCGGTG AGGAATTTCA TGAATTTCTC GAGGCTGAGA GGGGATTTTA TTAACGGTAG AGGTGAATCT GGACCAAAGA CGATTGTGAG AGAATCGACT CAGGTAAGTC CTAGCGCAAC ACCGTCGTCA GCGGCGGCGA GTGAATCTGG TTTAACACGG GGGACGGATG GTACTGAAAG CTCCACCGGA CTTAATCGGA AGGGAAAAGC AGTGGCTATG ACGGCGCCGG CCATTGAGAT TACCGGTACA TCGTCTTCTG TAGTGTCAAA GAGCGAAATC GAACCGGAGA AGACGAACGT TGATGACAAG AAACGAAAAG AGAGAGAAGC CACCACCGAG GAAGCTGAGT GCCGTAGCGA GGAAACAAAA CAAGCACGTG GATCAACAAC ATCTACCAAG AGATCTCGTG CTGCTGAAGT TCATAATCTC TCTGAAAGGA AACGGAGAGA TAGAATCAAT GAGAGGATGA AAGCTTTGCA AGAACTCATA CCTCGCTGCA ACAAGTCGGA TAAAGCTTCG ATGCTAGATG AAGCTATTGA GTACATGAAG TCTCTACAGC TTCAAATACA GGTGATGTCA ATGGGATGTG GAATGATGCC AATGATGTAT CCGGGTATGC AACAGTACAT GCCACACATG GCGATGGGTA TGGGTATGAA CCAGCCTCTT CCTCCTCCTT CCTTTATGCC ATTCCCCAAC ATGTTAGCGG CTCAAAGACC TTTGCCAACA CAAACTCAGA TGGGCGGGTC AAGACCGCAA TACCCTGTTC ATGCTTCTGA CCCGTCAAGA GTCTTTGTAC CGAACCAGCA GTATGATCCA ACCTCGGGCC AGCCTCAGTA TCCTGGTTAC ATGGATCCAT ATCAGCAGTT CCGCGGTCTC CACCTGACCC AACCACCTCA GTTTCAGAAT CAAGCAACAT CGTACCCAAG TTCGAGCAGG GTAAGTAGTA GCAAGGAATC TGAGGATCAA GGAAACCACA AAACAGGTTA A |
| Length | 1461 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 19455351.. 19457444 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G20180.2 |
| Description | phytochrome interacting factor 3-like 5 |
| TAIR curator summary | Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression. |
| Alias | [PIF1][PIL5][PHY-INTERACTING FACTOR 1][phytochrome interacting factor 3-like 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg933989 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related |
| 3.16228 |
Ahg481099 | DNAJ heat shock family protein |
| 8.06226 |
Ahg473508 | ATP-dependent Clp protease |
| 10.247 |
Ahg916555 | |
| 10.6771 |
Ahg479968 | Adenine nucleotide alpha hydrolases-like superfamily protein |
| 11.8322 |
Ahg924896 | ARM repeat superfamily protein |
| 13.9642 |
Ahg492570 | AGAMOUS-like 19 |
| 15.906 |
Ahg494333 | Peptidase S41 family protein |
| 16.2481 |
Ahg494970 | Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) |
| 16.4924 |
Ahg330015 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
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