Detail



ID : Ahg323737

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|323737|fgenesh1_pm.C_scaffold_5001281
Sequence
ATGAAGACAG CAAAGGGGAA AGATAAAGTT AAGACCACAA AGGAAGCCTT GAAGCCAGTT GATGACAGAA AGGTGGGAAA GAGGAAGGCA CCGGCTGAGA AGGCTACTAA ACGAGAGACT CGTAAAGAGA AGAAGGCTAA AAAAGACCCA AACAAACCGA AAAGAGCTCC TAGTGCCTTC TTTGTCTTTC TAGAAGATTT TAGGGTCACG TTCAAGAAAG AAAATCCAAA TGTGAAGGCC GTCTCTGCTG TTGGGAAAGC TGGAGGGCAG AAATGGAAGT CAATGTCTCA AGCTGAAAAA GCTCCATATG AAGAGAAAGC TGCAAGGAGG AAAGCTGAAT ATGAGAAGCA AATGGATGCA TACAACAAAA ACATGGAGGA AGGGAGTGAT GAATCTGAGA AGTCTAGATC TGAGGTGAAT GATGAAGATG AAGCCAGTGG GGAGGTAACA ATTCCACTAT ACAAGATAAG AGAAGAACTA CTAGAGAAGG AAGCGGCAGG TGATGATGAA GAAGAAGAAG AGGATGATGA CGATGATGAT GACGAGGAAG AAGACTAA 
Length558
Protein Sequence
Protein Residue
Map Locationscaffold_5: 14972330.. 14973601
Download Sequence
A.thaliana
AGI-codeAT3G51880.2
Descriptionhigh mobility group B1
TAIR curator summaryEncodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.
Alias[AtHMGB1][HMGB1][NFD1][high mobility group B1][NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1]
Gene coexpression
MR
MR Locus Description
1.41421 Ahg915275 RNA-binding (RRM/RBD/RNP motifs) family protein
10.9545 Ahg473263 multidrug resistance-associated protein 1
11.6189 Ahg327088 global transcription factor group A2
13.4907 Ahg471258
14.9666 Ahg488676 novel cap-binding protein
16.1864 Ahg486343 Tropomyosin-related
16.5831 Ahg320206 cyclic nucleotide-gated channel 6
17.0294 Ahg475318 pyruvate dehydrogenase complex E1 alpha subunit
25.9808 Ahg491627 DDB1-CUL4 associated factor 1
27.4226 Ahg480680 histidine kinase 1
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression