Annotation |
Description | jgi|Araly1|323737|fgenesh1_pm.C_scaffold_5001281 |
Sequence |
ATGAAGACAG CAAAGGGGAA AGATAAAGTT AAGACCACAA AGGAAGCCTT GAAGCCAGTT GATGACAGAA AGGTGGGAAA GAGGAAGGCA CCGGCTGAGA AGGCTACTAA ACGAGAGACT CGTAAAGAGA AGAAGGCTAA AAAAGACCCA AACAAACCGA AAAGAGCTCC TAGTGCCTTC TTTGTCTTTC TAGAAGATTT TAGGGTCACG TTCAAGAAAG AAAATCCAAA TGTGAAGGCC GTCTCTGCTG TTGGGAAAGC TGGAGGGCAG AAATGGAAGT CAATGTCTCA AGCTGAAAAA GCTCCATATG AAGAGAAAGC TGCAAGGAGG AAAGCTGAAT ATGAGAAGCA AATGGATGCA TACAACAAAA ACATGGAGGA AGGGAGTGAT GAATCTGAGA AGTCTAGATC TGAGGTGAAT GATGAAGATG AAGCCAGTGG GGAGGTAACA ATTCCACTAT ACAAGATAAG AGAAGAACTA CTAGAGAAGG AAGCGGCAGG TGATGATGAA GAAGAAGAAG AGGATGATGA CGATGATGAT GACGAGGAAG AAGACTAA |
Length | 558 |
Protein Sequence | |
Protein Residue | |
Map Location | scaffold_5: 14972330.. 14973601 |
Download Sequence |
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A.thaliana |
AGI-code | AT3G51880.2 |
Description | high mobility group B1 |
TAIR curator summary | Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated. |
Alias | [AtHMGB1][HMGB1][NFD1][high mobility group B1][NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1] |
Gene coexpression |
MR |
MR | Locus | Description |
1.41421 |
Ahg915275 | RNA-binding (RRM/RBD/RNP motifs) family protein |
10.9545 |
Ahg473263 | multidrug resistance-associated protein 1 |
11.6189 |
Ahg327088 | global transcription factor group A2 |
13.4907 |
Ahg471258 | |
14.9666 |
Ahg488676 | novel cap-binding protein |
16.1864 |
Ahg486343 | Tropomyosin-related |
16.5831 |
Ahg320206 | cyclic nucleotide-gated channel 6 |
17.0294 |
Ahg475318 | pyruvate dehydrogenase complex E1 alpha subunit |
25.9808 |
Ahg491627 | DDB1-CUL4 associated factor 1 |
27.4226 |
Ahg480680 | histidine kinase 1 |
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RNA-seq |
Seasonal expression (July 2011 to June 2013) |
|
The four seasons |
|
Growth Chamber expression |
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