Annotation |
Description | jgi|Araly1|324943|fgenesh1_pm.C_scaffold_6000163 |
Sequence |
ATGACTTCAA GCAATCCGGT GGTCGCCGAA GTAGTACCGT CGGAGAATTG TACAGATGCT ACAGAGACGA CGATGGCAAC GACGGAAGCT GGGGAAGCAC CGGAGAAGAA GGTGAGGAAA GCTTACACAA TCACCAAGTC TAGAGAGAGT TGGACTGAAG GCGAACACGA TAAGTTTCTG GAAGCTCTTC AATTGTTTGA TCGTGACTGG AAAAAGATAG AAGATTTTGT TGGTTCAAAG ACAGTCATTC AGATCAGGAG CCATGCCCAA AAATACTTTC TAAAGGTCCA GAAAAATGGG ACTTTAGCAC ATGTGCCACC CCCTAGGCCT AAGCGCAAAG CTGCTCATCC ATATCCTCAA AAGGCATCGA AGAATGCTCA AATGTCGCTA CACGTTTCCA TGTCCTTTCC TACTCAAATA AATAACCTGC CTGGATATAC TTCATGGGAT GATGATACCT CTGCATTGCT AAACATAGCC GTAAGTGGGG TTATTCCACC AGAAGATGAA CTTGAACTTG ATACCCTCTG TGGAGCAGAA GGCATGCGTT CTCATCTGTA CTCAGTTTTT GTGTTTTGTT TTGTTGTTGT TGGATCAAAT GGCATGATAA GTGAAACTAG TCCTTCAGCA TCTGGTATTG GAAGCTCAAG CAGAACACTA TCAGATTCTA AGGGTTTAAG AGTGGTGAAA CAAGCTCCCT CAATGCATGG TCTTCCTGAT TTTGCTGAGG TTTATAACTT CATTGGGAGT GTCTTCGATC CTGACAGCAA AGGCCGCATG AAAAAGCTCA AGGAAATGGA TCCTATAAAT TTTGAAACTG TTCTGCTGTT GATGAGAAAC CTCACAGTGA ACTTGTCAAA CCCTGACTTC GAACCTGCTT CTGAATATGT TGATGCTGCA GAGGAAGGTC ATGAACACTT GAGCTCTTAG |
Length | 930 |
Protein Sequence | |
Protein Residue | |
Map Location | scaffold_6: 743549.. 746131 |
Download Sequence |
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A.thaliana |
AGI-code | AT5G02840.1 |
Description | LHY/CCA1-like 1 |
TAIR curator summary | CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. |
Alias | [LCL1][LHY/CCA1-like 1] |
Gene coexpression |
MR |
MR | Locus | Description |
4.79583 |
Ahg477472 | CONSTANS-like 2 |
8.48528 |
Ahg483888 | NAD(P)-binding Rossmann-fold superfamily protein |
9.05539 |
Ahg479172 | high chlorophyll fluorescent 107 |
13.8564 |
Ahg488595 | Homeodomain-like superfamily protein |
14.1774 |
Ahg476523 | B-box type zinc finger protein with CCT domain |
15.4919 |
Ahg486298 | Phosphatidic acid phosphatase (PAP2) family protein |
15.8114 |
Ahg495776 | GATA type zinc finger transcription factor family protein |
17.7764 |
Ahg472939 | squamosa promoter binding protein-like 10 |
18.735 |
Ahg941228 | PHYTOENE SYNTHASE |
19.4422 |
Ahg935667 | circadian clock associated 1 |
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RNA-seq |
Seasonal expression (July 2011 to June 2013) |
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The four seasons |
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Growth Chamber expression |
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