Detail



ID : Ahg324943

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|324943|fgenesh1_pm.C_scaffold_6000163
Sequence
ATGACTTCAA GCAATCCGGT GGTCGCCGAA GTAGTACCGT CGGAGAATTG TACAGATGCT ACAGAGACGA CGATGGCAAC GACGGAAGCT GGGGAAGCAC CGGAGAAGAA GGTGAGGAAA GCTTACACAA TCACCAAGTC TAGAGAGAGT TGGACTGAAG GCGAACACGA TAAGTTTCTG GAAGCTCTTC AATTGTTTGA TCGTGACTGG AAAAAGATAG AAGATTTTGT TGGTTCAAAG ACAGTCATTC AGATCAGGAG CCATGCCCAA AAATACTTTC TAAAGGTCCA GAAAAATGGG ACTTTAGCAC ATGTGCCACC CCCTAGGCCT AAGCGCAAAG CTGCTCATCC ATATCCTCAA AAGGCATCGA AGAATGCTCA AATGTCGCTA CACGTTTCCA TGTCCTTTCC TACTCAAATA AATAACCTGC CTGGATATAC TTCATGGGAT GATGATACCT CTGCATTGCT AAACATAGCC GTAAGTGGGG TTATTCCACC AGAAGATGAA CTTGAACTTG ATACCCTCTG TGGAGCAGAA GGCATGCGTT CTCATCTGTA CTCAGTTTTT GTGTTTTGTT TTGTTGTTGT TGGATCAAAT GGCATGATAA GTGAAACTAG TCCTTCAGCA TCTGGTATTG GAAGCTCAAG CAGAACACTA TCAGATTCTA AGGGTTTAAG AGTGGTGAAA CAAGCTCCCT CAATGCATGG TCTTCCTGAT TTTGCTGAGG TTTATAACTT CATTGGGAGT GTCTTCGATC CTGACAGCAA AGGCCGCATG AAAAAGCTCA AGGAAATGGA TCCTATAAAT TTTGAAACTG TTCTGCTGTT GATGAGAAAC CTCACAGTGA ACTTGTCAAA CCCTGACTTC GAACCTGCTT CTGAATATGT TGATGCTGCA GAGGAAGGTC ATGAACACTT GAGCTCTTAG 
Length930
Protein Sequence
Protein Residue
Map Locationscaffold_6: 743549.. 746131
Download Sequence
A.thaliana
AGI-codeAT5G02840.1
DescriptionLHY/CCA1-like 1
TAIR curator summaryCCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Alias[LCL1][LHY/CCA1-like 1]
Gene coexpression
MR
MR Locus Description
4.79583 Ahg477472 CONSTANS-like 2
8.48528 Ahg483888 NAD(P)-binding Rossmann-fold superfamily protein
9.05539 Ahg479172 high chlorophyll fluorescent 107
13.8564 Ahg488595 Homeodomain-like superfamily protein
14.1774 Ahg476523 B-box type zinc finger protein with CCT domain
15.4919 Ahg486298 Phosphatidic acid phosphatase (PAP2) family protein
15.8114 Ahg495776 GATA type zinc finger transcription factor family protein
17.7764 Ahg472939 squamosa promoter binding protein-like 10
18.735 Ahg941228 PHYTOENE SYNTHASE
19.4422 Ahg935667 circadian clock associated 1
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression