| Annotation |
|---|
| Description | jgi|Araly1|327775|fgenesh1_pm.C_scaffold_7000002 |
| Sequence |
ATGGATACTG GCGGCAATTC GCTGGCGTCC GGACCTGATG GTGTGAAGAG GAAAGTTTGT TATTTCTATG ACCCTGAGGT CGGCAATTAC TACTATGGCC AAGGTCACCC CATGAAGCCC CATCGCATCC GCATGACCCA TGCCCTTCTC GCTCACTACG GTCTCCTTCA GCATATGCAG GTTCTCAAGC CCTTCCCTGC CCGCGACCGT GATCTATGCC GCTTCCACGC CGACGACTAC GTCTCCTTTC TCCGCAGCAT TACCCCTGAA ACCCAGCAAG ATCAGATTCG CCAACTCAAG CGCTTCAATG TTGGTGAAGA CTGTCCCGTC TTTGACGGCC TTTATTCCTT TTGCCAGACC TATGCTGGGG GCTCTGTTGG TGGCTCTGTC AAGCTAAACC ACGGCCTCTG CGATATTGCC ATCAACTGGG CTGGTGGTCT CCATCACGCT AAGAAGTGCG AGGCCTCTGG CTTCTGTTAC GTCAATGATA TCGTCTTAGC TATCCTAGAG CTCCTTAAGC AGCACGAGCG TGTTCTTTAT GTCGATATTG ATATCCACCA CGGGGATGGA GTGGAGGAGG CATTTTATGC TACTGACAGG GTTATGACTG TCTCGTTCCA TAAATTTGGT GATTACTTTC CCGGTACAGG TCACATACAG GATATAGGTT ATGGTAACGG AAAGTACTAT TCTCTCAATG TACCACTGGA TGATGGAATT GATGATGAGA GCTATCATCT GTTATTCAAG CCCATCATGG GGAAAGTTAT GGAAGTTTTC CGACCAGGGG CTGTGGTATT GCAGTGCGGT GCTGATTCAT TGTCTGGTGA TAGGTTGGGG TGCTTTAATC TTTCAATCAA AGGTCATGCT GAGTGCGTCA AATTTATGAG ATCGTTCAAT GTTCCCCTAC TGCTCTTGGG TGGTGGTGGT TACACCATCC GCAATGTTGC CCGTTGCTGG TGCTACGAGA CTGGAGTTGC ACTTGGTGTT GAAGTTGAAG ATAAGATGCC GGAGCATGAA TATTATGAAT ATTTTGGTCC AGACTATACA CTTCACGTTG CTCCAAGTAA CATGGAAAAT AAGAATTCTC GTCAGATGCT TGAAGAGATT CGCAATGACC TTCTCCACAA TCTCTCTAAG CTTCAGCATG CTCCAAGTGT GCCATTCCAG GAAAGACCAC CAGATACAGA GGCTCCCGAG GTTGATGAAG ACCAAGAAGA TGGAGATAAA AGATGGGATC CGGATTCAGA TATGGATGTA GATGATGACC GTAAACCTAT ACCAAGCAGA GTAAAAAGAG AAGCTGTTGA ACCAGATACA AAGGACAAGG ATGGACTGAA AGGAGTTATG GAGCGTGGCA AAGGTTGTGA GGTGGGGGTG GATGAGAGTG GAAGCAGTAA GGTTACAGGA GTAAACCCAG TGGGAATGGA GGAAGCAAGT GTGAAAATGG AAGAGGAAGG AACAAGCAAG GGTGGGGCGG ACCAGGTGTT TCCTAAAATA TAA |
| Length | 1503 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 10822.. 13419 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G38130.1 |
| Description | histone deacetylase 1 |
| TAIR curator summary | Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. |
| Alias | [ATHD1][ATHDA19][HD1][HDA1][HDA19][RPD3A][ARABIDOPSIS HISTONE DEACETYLASE 1][ARABIDOPSIS HISTONE DEACETYLASE 19][histone deacetylase 1][HISTONE DEACETYLASE 19] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.16228 |
Ahg923204 | DEA(D/H)-box RNA helicase family protein |
| 3.31662 |
Ahg492797 | tubulin beta-9 chain |
| 4 |
Ahg940873 | phosphate transporter 3;1 |
| 5 |
Ahg945111 | hexokinase 1 |
| 7.74597 |
Ahg335256 | ATP binding microtubule motor family protein |
| 7.93725 |
Ahg496600 | glutamate tRNA synthetase |
| 7.93725 |
Ahg487463 | ABC-2 type transporter family protein |
| 8.12404 |
Ahg482072 | genomes uncoupled 1 |
| 9.64365 |
Ahg913611 | |
| 10.0995 |
Ahg488410 | reversibly glycosylated polypeptide 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|