| Annotation |
|---|
| Description | jgi|Araly1|329014|fgenesh1_pm.C_scaffold_7001241 |
| Sequence |
ATGGCCACTG AGGCTGCACA TGATGGGCAT AGTGATGACG GTGATGATAA GCCTATAGTG TTCAAGAGAA GTGATAATGG AGATTCTGAG GATGTTAGAC CTTTAAGCTC AATACTTTTC AGGAATTCCC CTTTGGATAG GCCAAGTGAA ATTATTAAAG ATGAGTCTGA TGATGATGAA GCTCCAATAT CGTCAAGGTT TCGAAAGAAG AATGGTAATG GGGTTTCAGG TAGCAAACAA GACTCTACTG ATGAAAATAA ATCTTTGGTT AATAAGTTGA AGAATGGCTC CACACTTGAG CATGAATGTT CCAAGGTATC TGGCAAGAGA ATTCTGGAGA AGAGCAGTTC TGCAGATCAA TCTTCTATGA AGAAGCTCAA GGTATCATCT TCATCTACGT CAGTTGCCAT GAAACAAGAT TCTTTGAAAA AACTAGGTGA TAAGAGGAAG GTTGAAGTAT CACCTAAAAA ATTGTCAGTC AAAGAAGATG AAACTGAAGA TGATGATGAT GATGATGATG ATGTTCCCAT TGCCAAGAGA ATCAAGTCAG AATCCTCCAA GTATAAAACA CCCTCTGCAA AGCCTAAAGT GGTAAAACAG AGTTCTACTT CATCAGCTAC GAAGTCCAAA GTGAAAAGAG TAGTTTCTCC TCCGTCCAAG ACAAGGAGCA AAAAGTCCAA GAAAGTGATG AACGAATCTA AGTTTGCTAA GAGTTCAAAA ACCTTACCTA CTGGCGATGG TAAAAAGAAA TGGACAACCT TGGTACACAA TGGTGTCACT TTTCCACCTC CATATAAACC TCATGGGGTT CAGATTTTAT ATAAGGGGAA TCCAGTCAAC TTATCTCCTG ACCAAGAAGA GGTTGCAACG ATGTTTGCTG TGATGAGAGA GACAGACTTT TATAATAAAC CTCGATTTAG GGAAAATTTC TGGAATGATT GGCGAAAACT ACTTGGCAAG AATCATGTGA TACAGAAGCT GGATGATTGT GACTTTACAC CAATATATGA TTGGCATTTG GAAGAAAAGA AGAAGAAAAA AGCTTCGCCA GAGAAAAACC CGAAACAGGG GGAGAAATAT ATGTGGGCTG TTGTGGACGG TGTCAAAGAG AAGGTTGGGA ATTTCAGTGT AGAACCTCCC GGGCTATTCC GAGGTCGAGG AGAACATCCC AAGATAGGAA AATTGAAAAG GCGTATATAT CCTAGTGACA TCACTCTAAA TATCGGGAAA GATGCTCCTA TACCTGAATG TCCCATCCCT GGTGAAAGAT GGAAAGAAGT AAAGCATGAT AACACAGTCA TCTGGCTAGC TATCTGGAAA GATCCTATTC ACCCGGGACG CTACAAGTAT GTTTCTCTGT CAGCTAGCAG TTCACAGAAA GGTCAAAGCG ACAAGAAGAA GTATGAGAAA GCCAGGAATC TTAAGGACCA CATAGAAAAT ATAAGAGCAA CGTACACCAA GAATTTTACT GCCAAGGATG TTTCAAATCG ACAAATAGCT GTGGCTACCT ATCTCATTGA TAAATTGGCA CTTAGAGCTG GAAATGAGAA GGATGATGAT GAGGCGGACA CAGTTGGTTG CTGTACATTA AAAGTAGGAA ATGTGGAGTG TGTTCCTCCA AATAAGCTAA AGTTTGACTT CCTTGGTAAA GATTCAATCC AATATGTGAA TACCGTCGAA GTTGAACCTC TTGTTTACAA AGCCATTGCA CAGTTCCGGG CTGGTAAATC AAATTCAGAC GATCTTTTTG ATGAGTTAGA CACAAGCAAA CTGAATGCTC ATCTTAAGGA GCTTGTAACT GGCCTCACAG CTAAAGTATT CCGTACTTAC AATGCATCCA TCACGCTGGA TGTAATGTTG AGGCAAGAAA CCAGAGAGGG TGATGTTAAA CAGAAAGTAG TAGTTTATCA GCAAGCAAAC AAGGAGGTAG CGTTAATTTG TAATCACCAG CGTACCGTTT CAAAGTCTCA CGGTGCACAA ATCCAGAGAT TGGCTGGAAA AATAGAAGAA CTCAAGGAGG GTCTTAAAGA ACTCAAAAAC AATTTGGAGA GGGCTAAAAA GGGAAAATCT CCATTGGAAG GTTCAGATGG AAAGAAAACA AGAAACATAA CTCCAGAAGC GTGGGAGAAG AAGATAGCTC AACAGAAGAT GAAGATAGAG AAGATGGAAG GAGACATGCA GACAAAGGAG GACTTGAAAA CCGTGGCGCT GGGCACGTCT AAGATCAACT ACATGGATCC TAGGATCACG GTCGCGTGGT GCAAACGCCA TGAAGTACCC ATTGAAAAGA TATTCAACAA GTCTCTGCTG GAGAAATTTG CGTGGGCAAT GGACGTAGAA CCTCACTTCA CATTCTAA |
| Length | 2358 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 6061666.. 6065322 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G55300.2 |
| Description | DNA topoisomerase I alpha |
| TAIR curator summary | Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing. |
| Alias | [MGO1][TOP1][TOP1ALPHA][MGOUN 1][TOPOISOMERASE 1][DNA topoisomerase I alpha] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 30.7409 |
Ahg323341 | F-box and associated interaction domains-containing protein |
| 35.7071 |
Ahg915157 | |
| 36.3868 |
Ahg921560 | FBD, F-box and Leucine Rich Repeat domains containing protein |
| 44.0908 |
Ahg321478 | Fatty acid hydroxylase superfamily |
| 55.5878 |
Ahg948117 | |
| 67.2978 |
Ahg478446 | DCD (Development and Cell Death) domain protein |
| 73.6207 |
Ahg901977 | |
| 77.0714 |
Ahg894935 | |
| 80.025 |
Ahg351608 | Protein of Unknown Function (DUF239) |
| 84.113 |
Ahg936150 | F-box family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|