| Annotation |
|---|
| Description | jgi|Araly1|333565|fgenesh1_pg.C_scaffold_1000130 |
| Sequence |
ATGGAACTAG GATGGAGAAA CGACGTCGGA TCATTTGCTG TGAAAGATCA TGACGTAGGA GAAATGGCAA GAAGTGATGA AGATCGTCTA ATTCACGGCT TAAAATGGAG CTACGACAAC TACTTTGATC ATGATCAAAC AGATAATCAT CTCCAAATTG TTCCAGAGAT CCAGAAAGTA GAAGAAGAAG TACCTAAGAC AGATTTGTTG GTTGCTGTCC CTGATGAACA TTCTGAAACT GGTGATCATC ATGATCATAT TTCAGATAAT CGATATTATT CGAGAAACAA ACATGAGAAA CCAAAGCGGC GTCGTAGCCA GGTCTTCAGT GATGAGGAAT CAGATGGGTT TACTAGAGAA GTTCCTTCAG TGACACGAAA AGGTTCCAAG AGAAGAAGAA GCGAGGAGAT GTGTAATAAG ATGCGTACGC TACAGCAACT TGTACCTGAT TGTCACAAGA CGGACAAGGT TTCAGTTCTC GATGATGCCA TTGAGTATAT GAAAAGTCTT CAGCTTCAAT TCAAGGTGAT GTCAATGATG GGGATGAATC CTTATTTTCC TCCGGCTATA TTAGACTATG GAATAATGAA CAACCACCAG TTGACTGCGA TGGCTGTGGC ACGGCAAAAT GTGGCGAATC AAATGATGTC GTCACAGTTG ATTCCGGCGT CAAATTGGCC ATTACCACCG TTTACTAATT TTTCATTCCC ACACTCACCT AATCAACCTC TCTTTCTTAC AACAACACCA CCAGCTTCTT CTCCTCAATG CCTTCACGGT TTGGTTCCTT GTTTTCCAAG TTTCCTAGAT TTTTCTTCCC ATGCGATGAG AAGACTATGA |
| Length | 840 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 546988.. 548580 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G02340.1 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| TAIR curator summary | Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. |
| Alias | [FBI1][HFR1][REP1][RSF1][LONG HYPOCOTYL IN FAR-RED][REDUCED PHYTOCHROME SIGNALING 1][REDUCED SENSITIVITY TO FAR-RED LIGHT 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 7.54983 |
Ahg934956 | Glutaredoxin family protein |
| 31.4325 |
Ahg494910 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| 35 |
Ahg491244 | 3-ketoacyl-CoA synthase 16 |
| 43.382 |
Ahg948089 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| 44.0114 |
Ahg487521 | sulfotransferase 2A |
| 51.3809 |
Ahg473157 | SAUR-like auxin-responsive protein family |
| 55.2087 |
Ahg495619 | MBOAT (membrane bound O-acyl transferase) family protein |
| 56.9473 |
Ahg918720 | Fatty acid hydroxylase superfamily |
| 63.4035 |
Ahg356101 | transposable element gene |
| 88.0284 |
Ahg939651 | Protein phosphatase 2C family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
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| Growth Chamber expression |
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