Detail



ID : Ahg340237

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|340237|fgenesh1_pg.C_scaffold_2002336
Sequence
ATGGTGGAGA AGAAGAGGAG AAGAAGAGAA GAAGAAGAAG AGGATAAGAA GAAACGTGAA AATTATGTGG AGAAGATATG GATTAGCAAA AGAAATGACA AGGAAAATGC GGGTTTTACA ATAAAGTACG GTTCAACTAT GGTATGTATT GGAGAAATGA ATAATTCTCA CAAGTCTCAG ATGCCCAAGG GACACACGGA GGAGAAGAAG CCGACGCCTC TACTCACCAC CGACAGGGTC GAGAATAGGT TAAAGAAACC AACCACCTTC ATCTGCAAGC TCAAGTTCCG GAATGAGCTC CCTGACCCTA GTGCTCAGCT TAAGCTTATG ACCATTAAGC GGGATAAAGA TCAATTTACA AAGTATACCA TCACATCGCT GGAGAAATTA TGGAAACCAA AAATCTTTGT CGAGCCTGAT CTTGGAATAC CCTTGGATCT GCTTGACCTA AGTGTATACA ACCCTCCCAA ATTCAAGGCA CCTCTTGCCC CTGAAGATGA AGAACTGCTG CGTGATGATG ATGCTATTAC ACCTATTAAG AAAGATGGCA TCCGGAGAAA AGAAAGGCCA ACTGATAAAG GTGTTTCCTG GCTCGTGAAA ACACAATACA TTTCTTCTAT TAATAATGAA TCGGCAAGAC AGTCGCTAAC TGAGAAACAA GCAAAGGAAC TGCGAGAGAT GAAAGGAGGC ATCAACATCT TGCACAATCT TAACAATAGA GAGAGACAAA TCAAGGATAT TGAAGCATCC TTTGAAGCAT GCAAGTCTCG ACCAGTTCAT GCCACCAATA AAAGCTTGCA GCCGGTTGAA GTTTTACCAC TGTTGCCATA TTTTGATAGG TTGATTGCTC CTTATTTTCC CTTTGAGACA ATCTTAAATC TTAAATCCCG AATCAGGCAA TTTTTTCTCA TAATAGCCCT GCATGTAGAC ACAACAATGA AGCCCTTGAA AGCTGACACT TTACGGTATT ATCTGTATGT TGGCTTTCTG TGA 
Length993
Protein Sequence
Protein Residue
Map Locationscaffold_2: 18225766.. 18227832
Download Sequence
A.thaliana
AGI-codeAT1G79730.1
Descriptionhydroxyproline-rich glycoprotein family protein
TAIR curator summaryEncodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.
Alias[ELF7][EARLY FLOWERING 7]
Gene coexpression
MR
MR Locus Description
5 Ahg338284
10.4881 Virus0490
15.1987 Virus0325
17.6635 Virus1973
21.5639 Ahg328326 Cyclase family protein
23.8747 Ahg930767
32.4808 Ahg906046
33.1662 Ahg898669
33.9853 Ahg334284 Protein prenylyltransferase superfamily protein
35.4965 Ahg933705 glutathione peroxidase 2
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression