| Annotation |
|---|
| Description | jgi|Araly1|341449|fgenesh1_pg.C_scaffold_3001212 |
| Sequence |
ATGGCGTCTT CTCCTGGTAA TACTAACCCT CACAATCCTC CTCCGTTTGA TCTCGGTATT CTCTTCAAAC CTTCATCGAA TCCTTATCCG CCGCCGCCGG CATCTTATCC TCCGCATACA GGTCCTTTTC TTCACAATCA GTACGATCAG CAGCACTACG CGCCGCCTGG TATCTCCGCT CAACCATCGC CGGTGACTCA GCAGCAACAG GATGTGTCTT CCTCTTCCGC CGCGACTAAC TTGCATCCAC AGAGAACGCT ATCTTATCCC ACGCCACCTC TCAACCTACA ATCGCCCCGT TCCAATCACA ATCCCGGTAC GCACATCCTC GCTCTCCTCA ATAATAACAA CGGAGTCCCG GTGGCTAACC AAGAGCCGTC GCATCAGCTT CCAGTAGTGA ATCACAACGA GATCGCTCGG TCTTTTCCCG GCGGTTCAGG TCCTATTCGC GTCCCGAGCT GTAAACTGCC CAAGGGAAGG CGATTGATTG GTGAACACGC GGTGTACGAT GTGGATGTGA GATTACAAGG TGAGATTCAG CCGCAGCTGG AGGTGACTCC GATTACCAAA TACGGCTCGG ATCCTCAGCT CGTAGTCGGT AGGCAAATCG CCGTGAATAA GGTCTACATT TGCTATGGAT TGAAAGGAGG AAACATTAGG GTTCTCAATA TCAACACAGC ATTGAGGTCT CTGTTCCGTG GCCATTCTCA GAGAGTGACG GACATGGCTT TCTTTGCCGA GGATGTTGAT ATGTTGGCCA GTGTTAGTCT AGATGGAAAA GTTTTCGTGT GGAAAATTTC TGAAGGGTCT GAGGGAGAGG ATCAGCCCCA AATAACTGGA AAGATAGTAC TTGCTCTTCA GATACTAGGA GAGGAAGACA CCAAACATCC ACGCGTTTGT TGGCACTGCC ACAAACAGGA AATTTTGGTA GTTTCAATTG GTAAACATGT GTTGCGAATT GATACTACAA AAGTTGGCAG AGGTGAAGTA TTCTCTGCTG AGGCCCCTCT CCAGTGTCCC CTTGATAAAC TCATTGATGG TGTTCAGATT GTTGGTAAGC ATGATGGAGA AGTTACTGAT TTGTCAATGT GCCAATGGAT GACCACACGC CTGGTTTCTT CTTCAGTTGA TGGCACGATT AAGATATGGC AAGATCGTAA GGCACAACCA CTTGTAGTTT TGAGGCCTCA TGATGGACAT CCAGTCAGTT CAGCCACGTT TGTGACATCT CCTGAGAGAC CTGATCACAT CATACTTATC ACGGGGGGTC CTCTAAATCG AGAAATGAAA ATCTGGGTCT CTGCTGGGGA AGAAGGGTGG CTTCTACCAG CTGATGCTGA AGCATGGAGG TGCACCCAGA CTCTTGATTT GAAAAGTTCA ACTGAGCCAC GAGCTGAAGA TGCATTTTTT AACCAAGTCA TAGCATTATC TGAAGCAGGC TTGCTTTTAC TTGCAAACGC AAAAAGGAAC GCTTTATATG CTGTGCATTT GGACTATGGT TCTTCTCCAG TTGGTACGCG GATGGATTAC CTATCAGAGT TTACAGTCAC TATGCCCATA TTGAGTTTCA TTGGGACAAA TGATCCTCCA GAAGAACCCA TTGTTAAGGT TTATTGTGTT CAGACTCTAG CAATCCAGCA GTATACTTTA GACTTATGCT TATGCTTGCC ACCACCTATA GAAAATATGG GTTTGGAGAA GTCAGATTCT AGTGTATCGC GAGAGGCAAA TATTGTTGAA GGCACGTCAG AACCATCTGG ACTTAAGCCT ACTGACTTAC CTTCAGTTGA TTCAGTGCCA AAACCTTCTA TTATAGTGAA TAGATCGGAA AGTGCTAATA AGTTGAGTTT TCCATCAGCA GAAGCCACAT CTCAAGCAAT TGTTCCACCC AATGGTGAAC CTAAAACTTC TGGTCTGCCA TCTCAGACCA GTGGTGCAGG TTCTACATAT GCTACTTCAC CCCAACTTCC TCTAAGTCCC AGACTATCGA GTAAACTTTC TGGCTATCAC ACTCCTGTAG ATGCTATTGA GCCAGTAATA CCTCATCATG AGCTCGGTGG CAAAACCCCT TCTGCTGATT ATTCTGTTGA TAGGCAAATG GATGCTATTG GAGAAAGAAA TTTGGACGTG TCATCTGTAG AAGAAAGCTC AAGAAGCAAG GACTCGAATG TTACGCCTGA TGATGATGTG TCTGGGATGC GAAGCCCATC AGCTTTTTTC AAACACCCCA CTCATCTTGT AACTCCTTCA GAGATATTGA TGGGTGTTTC GTCCGCTGAA GCCTCTATTA CTACTGAAGA CAGGAGAGAT AGGGATGCAA ATATTCAGGA CGTGAATAAT GATGCAAGAG ACTCCGAAGT TGAGGTGAAA GAAATAAGTG TAGCAAGGTC GACACAGAAT GGTGAAATCA ATGATCATGG TGAAACTGAG AATCTCACTT CAGAAAATAG AGAAAAAGTT TTCTGCTCAC AGGCTTCAAA TCTCAGCACC GATATGGCAA GAGACTGTTA TCCAACTACT GAGGGAACTT TCATTCCAGG GGAACCTAAG GCTTATGGAC AACCTTTAAA GGCTGGAGAT GAAATTGGTC TTGACTCGAG AGGTGTGTCT GCAAAGCTTC CTGAATCGGG TTCATCTAGT GGGCTTTCAC AGTTGCCAGG TACAACTAGC AAAGGGAAGA AGCAGAAGGC CAAAAATTCA CAGGGTCCCG GTTTGTCATC TACATCCTCA AATGTTGCTA ATCTGGCTGA CTCCTTCATT GAGCAAAGTC AGAGCTTAAG TCATCCCATG ACAGATTCAC TTCCTCAGTT GTTAGCAATG CAAGAAACGA TGAATCAGAT AATGGCTTCA CAGAAGGAGA TGCAGAGACA ACTATCAAAT GCTACCACTG GCCCTATCGT AAAAGAAAGT AAAAGACTAG AAGTTGCGTT AGGGAGAATG ATTGAGAAAT CCAGCAAGTC AAATGCGGAT GCTCTATGGG CCCGCTTCCA AGAGGAGACT GTTAAGAATG AAAAGGCATT GCGTGACCAT GCACAGCAAA TTGTGAATGC AACGACAAAC TTCATGAGCA AGGAGTTAAA TGCCATGTTT GAGAAAACGA TAAAGAAGGA AGTTGCTGCA ATTGGTCCAG CCCTTACACG TTCAGTAATA CCAGTTATTG AAAAAACTGT ATCTTCTGCA ATCACAGAGT CCTTTCAGAG AGGAATTGGT GACAAAGCAG TCAATCAGCT TGACAAATCT GTTAATTTAA AGCTTGAAGC AACCATAGCT AGGCAAATTC AAGCCCAATT TCAAACCTCT GGCAAGCAAG CCCTCCAGGA AGGTCTTAGG TCAAGTGTGG AGTCCTCAGT CATACCTTCC TTTGAGAGGG CATGCAAGGC CATGTTTGAC CAAATAGACT CAGCCTTCCA GAAAGGTATT GCTGAGTATA CAAATGCAGC CCAGCAACGG TTTGACTCTG GACATTCCCA GCTTGCTCAT ACTTTAAGGG AAACAATTAC TTCTGCGTCG TCAGTTGCTC AAGCCTTAAG TCGTGAATTA GCCGAGAGCC AAAGGAATCT CTTAGCTCTC GCAGCTGCTG GAGCTAATTC TGGTGGGTCT AATCCCTTGG TTACTCAACT AAGTGGCGGA CCTTTGGGTG CTCTTCTTGA CAAGGTTGAA GCACCTATGG ACCCAACAAC AGAACTATCA AGGTTGATAT CTGAACGCAA GTACGAAGAA TCTTTCACTT CGGCCCTACA GAGAAGCGAT GTCTCTATAG TATCATGGCT TTGCTCACAG GTGGATCTCC GTGGATTACT GGCAATGAAT CCGCTACCGC TGAGCCAAGG CGTGCTTCTT TCACTGCTGC AGCAGCTAGC CTGCGACATC AGCAAGGACA CATCCCGTAA GCTGGCTTGG ATGACTGATG TGGTTGCAGC CATAAACCCA TCAGACCAGA TGATTGCGGT CCACGCTCGC CCAATCTTCG AACAGGTCTA TCAGATTCTG CACCATCACC GCAACGCACC AGGCAGCGAT GTCTCAGCCA TCAGACTGAT AATGCATGTC ATCAACTCCA TGCTTATGGG CTGCAAATGA |
| Length | 4080 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 5077481.. 5083394 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G13290.1 |
| Description | varicose-related |
| TAIR curator summary | |
| Alias | [VCR][varicose-related] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.4641 |
Ahg478776 | transmembrane nine 7 |
| 5.74456 |
Ahg478716 | proteasome activating protein 200 |
| 7.48331 |
Ahg941463 | E1 C-terminal related 1 |
| 7.74597 |
Ahg340908 | glucan synthase-like 10 |
| 8 |
Ahg488339 | golgi alpha-mannosidase II |
| 8.48528 |
Ahg934284 | Enolase |
| 8.66025 |
Ahg493344 | Bax inhibitor-1 family protein |
| 9.48683 |
Ahg484260 | SPFH/Band 7/PHB domain-containing membrane-associated protein family |
| 10.3923 |
Ahg924574 | Peptidase M1 family protein |
| 12.2474 |
Ahg484854 | clone eighty-four |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|