| Annotation |
|---|
| Description | jgi|Araly1|471669|fgenesh2_kg.1__1623__AT1G14790.1 |
| Sequence |
TTTTTCTTTA GATAATTATT GTACTGGGGT CTTTGTTCCC ATTGTAAATG AAAGTGAGAA TCCAAAGGCC ATCAGAGGGA AGATCGATCA GTCATCGCCG CGGTAAGTCA TCTGTTATAG AGAAGATGGG GAAGACAATT CACGTGTTTG GATTCCCGAA TGGTGTGAGC GCAGAGGAAG TTAAGAAATT TCTTGAAAGA CTCACTGGTT CAGGCACTGT TTACGCTATC AAAGTTAGAC AACCAAAGAA AGGTGGTCCA AGAGTCTTTG CCATTGTTCA ATTCACAAAT GAGATATATG CAAGGCAGAT CATCACGGGT GCCGCAGAAC GTCGTCTTTA TTATGGGAGA TCTTATCTCA ATGCTTTTGA AGTGGAACAA GACATTGTTC CAAAGCCAAG AGCTTCATTG CACAACATCT CTGGTTTAAA GATGTATTTT GGATGTCAAG TCTCAACTCA GACGCTTTTA ACTCTCTGGA GTGCTCAAGA TGTTTCTGTC TCGTTTGGAA TTGGGATGAG GAAACTGCAT TTTTCGTTTT CTTGGTATCA AAAGGACTAT CGTCTTGAGC TTTCGTATGA GAATATATGG CAGATCGATT TGCATTCCCC GCAAGGACGG GCGTCGAAGT TTCTTGTGAT TCAGGTGATT GGTGCTCCTA AAATCTTTGA GAAAGAGGAT CAACCTATCA ATCTTTTGTT TGGAATGATG GATTTTTACA GTGATGGGTC TGATGAGCAA TGGATAAGGA CTACAGATTT CACTTCATCT TCTTGTATCG GTCAATCAAC AGCCTTCTGT TTAGAGCTTC CTGTTCATCT TAATGTTCCT GATTTCAGAG AGAATTTTGC CAACTATGCA GAGCACAGAG CCAGCACTTA TCTCATTGAA TCCGGTTCTA GCTATTCATC TAACGCGAAC AAGCTTGTTC CGGTTGTTGA TCCTCCTCCA GGGTTTGATT TGCCTTTTGA GATCTTGTTT AAACTTAATA CATTGGTGCA GAACGCGTGT CTCCCCGGGC CAGCTCTTGA TCTTGATGTT TATCAGTTGC TTAATCCCAA AAAAATTGAC AGAGCTCTCA TAGATCACTG TCTTGAGAAA CTCTTTTACC TTGGGGAATC TTGCTATGAG CCTGCTCGTT GGCTTCGCAA ACAGTACAAG GAGTTGAGCT CGAAAGGAAA GCTTCCACTG TCTCCTACGA TATCTCTTGA TGATGGACTT GTTTATATGT ATCGCGTTCA AGTTACACCA GCAAGAGTCT ATTTCTCTGG ACCAGAGGTG AATGTTTCGA ATCGTGTGCT TCGACATTAC TCCAAGTATA TCAACAACTT CCTCAGGGTA TCATTTGTTG ATGAAGATCT TGAAAAAGTT CGTTCCATGG ATCTGTCTCC ACGCTCTTCT ACTCAAAGAA GAACCAAGTT ATACGACAGG ATATACTCTG TCCTTCGCGA TGGGATTGTC ATAGGCGATA AGAAGTTTGA GTTTCTCGCC TTTTCTTCCA GCCAGTTGCG GGAGAACTCT GCTTGGATGT TTGCACCGAT AGAGGGGCTA ACATCAGCAC ACATCAGAGC TTGGATGGGT GATTTTGACC ATATAAGAAA TGTAGCAAAA TATGCTGCAA GGCTTGGTCA ATCATTTAGC TCGTCAAGAG AGACACTCAA TGTTAGGAGT GATGAGATCG AAGTGATTCC TGATGTTGAG ATTATATCTT TAGGGACACG CTATGTGTTT TCTGATGGAA TAGGAAAGAT CTCAGCTGAA TTTGCTAGAC GGGTGGCTAA GAAATGTGGC CTCACAGAGT TTTCTCCATC TGCTTTTCAA ATCCGTTATG GCGGTTATAA AGGAGTGGTG GCTGTTGATC CAAACTCATC AAAGAAACTG TCTCTGAGGA AGAGTATGAG CAAATTCGAG TCGGAGAACA CGAAGCTTGA TGTTTTGGCA TGGAGCAAGT ACCAACCTTG TTATATGAAC AGACAACTGA TTACACTTTT GTCTACTCTC GGAGTTGAGG ACAGTGTATT TGAGAAGAAA CAAAGGGAAG TTGTGGATCG GCTCGACGCA ATCTTAACTG ATCCTTTGGA GGCTCACGAG GCTCTTGGTT TAATGGCTCC AGGGGAGAAC ACAAATATTC TCAAGGCATT GATCTTGTGT GGCTATAAAC CTGACGCCGA ACCTTTCCTT TCAATGATGC TTCAGAATTT CAGGGCATCT AAGTTGTTAG AACTACGGAC AAAAACAAGG ATTTTCATTT CTGGTGGAAG ATCTATGATG GGATGCCTAG ATGAGACCAG AACATTGGAG TACGGTCAGG TAGTAGTGCA GTATTCAGAT CCCATGAGGC CGGGAAGGCG ATTCATCATC ACCGGACCTG TTGTTGTTGC GAAAAACCCT TGCTTGCATC CTGGTGACGT GCGTGTTCTT GAAGCTGTCA ATGTCCCAGC TTTGAATCAC ATGGTGGACT GCGTTGTTTT CCCGCAAAAG GGATTGAGGC CACACCCAAA CGAATGTTCT GGGAGTGATT TAGATGGAGA TATATACTTT GTATGTTGGG ATCAAGAATT GATTCCACCA AGAACGTCTG AACCAATGGA CTACACTCCT GAACCTGCTC AAATTTTGGA TCATGATGTC ACAATTGAGG AAGTTGAAGA GTACTTCGCA AACTACATTG TGAATGATAG TTTAGGTATC ATCGCGAACG CTCATACCGC CTTTGCGGAT AAGGAACCAC TCAAGGCGTT TAGTGACCCA TGCATTGAGC TTGCAAGGAA GTTTTCAGTT GCGGTAGATT TCCCAAAAAC TGGTGTTGCC GCAGAGATAC CGCAACATCT TTACGTGAAA GAGTATCCTG ATTTCATGGA GAAACCGGAT AAGCCAACAT ATGAGTCGAA GAACGTGATC GGTAAGCTTT TTAGAGAGGT AAAAGAGCGA GCTCCACCGC TGATCTCGAT CAAATCATTT ACTCTTGATG TGGCCTTAAA GTCTTATGAT AAAGACATGG AAGTTGACGG ATTTGAGGAG TATGTTGATG AAGCTTTCCA CTACAAGGCG AATTATGATT TCAAGTTAGG TAATTTAATG GATTACTATG GGATTAAGAC TGAGGCTGAG ATACTTAGTG GTGGTATCAT GAGGATGTCA AAGTCATTCA CCAAGAGAAG AGATGCAGAG TCGATTGGAA GAGCGGTTCG TGCGTTGAGG AAAGAAACTT TGTCGTTGTT CAATGCTTCT GAAGAAGAAA ATGAGTCAGC AAAGGCTTCG GCTTGGTATC ATATAACGTA CCACTCAAGT TACTGGGGAC TTTATAATGA GGGTTTGAAT CGTGACCATT TCTTAAGCTT TGCGTGGTGC GTTTATGATA AGCTTGTGAG GATCAAGAAG ACCAATGCTG GGAGGCGTCA GAGGCAGGAG ACGCTCGAGC GGTTAGGCCA TGTTCTGCGT TTGAGTTGAT TTTTTATTTT TACATAAATG TTTGGTTTTA AGTGAAATCA GAAGTTTCTA CTTTCTTTTG TACAAAAATC TCTAAAAAAA ACTTGCTATA ACTAAGAGTT TCTATTTTCA ACCTCTCAAC ATATGTATGT ACACAAACAA TTTCTCTTAA AGGACCAATC CCATCAAAAC ACATACACAA CCTCTATAAT ATATACACAC ACTCC |
| Length | 3655 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 5969248.. 5973304 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G14790.1 |
| Description | RNA-dependent RNA polymerase 1 |
| TAIR curator summary | Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. |
| Alias | [AtRDR1][ATRDRP1][RDR1][RNA-dependent RNA polymerase 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4 |
Ahg477442 | receptor-like protein kinase 2 |
| 4 |
Ahg329070 | MAP kinase/ ERK kinase 1 |
| 9.74679 |
Ahg496271 | putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain |
| 17.1756 |
Ahg328588 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| 18.8944 |
Ahg926633 | cinnamyl-alcohol dehydrogenase |
| 22 |
Ahg905845 | scramblase-related |
| 22.1133 |
Ahg477927 | Protein phosphatase 2C family protein |
| 25.3772 |
Ahg935301 | Integrin-linked protein kinase family |
| 31.305 |
Ahg931248 | UNC-50 family protein |
| 31.3209 |
Ahg473694 | Protein kinase family protein with leucine-rich repeat domain |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|