Detail


ID : Ahg471827

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|471827|fgenesh2_kg.1__1781__AT1G16300.1
Sequence
TTTTTAACTC AACAGAACAT TTTCTTGGCT CCACAGCTAC ACTCAAAAGC CATTCAGCGG AAGGTTTTTG GCGGCGAGAT CTCTCTGTTT CTGGTAGCTT AGCTATGGCC TTCTCTTCTC TCCTCAGATC CGCCGCCACT TCCGCCGCAG CTCCTCGTGT TGAGCTTTAT CCATCGTCAT CGTACGATCA TTCTCAGGTC ACGTCAAGTC TTGGATTCAC TCACAATCTG ACCTCGTCTA GATTTTCTGG TGCTGCAGTT TCAACTGGAA AATGCAATGC GAAGAGCGTT CAACCCATCA AGGCCACAGC TACAGAAGCA CCTCCTATTG TTCATAGGTC AAGGAGCAGT GGAAAGACAA AGGTTGGGAT CAACGGTTTT GGTCGAATTG GAAGGTTGGT CCTCCGCATC GCTACCTTTA GGGATGATAT TGAGGTTGTA GCAGTCAACG ATCCATTCAT AGACGCCAAG TACATGGCTT ACATGTTCAA GTATGATTCT ACTCATGGAA ATTACAAAGG AACCATCAAT GTAATTGATG ATTCTACTTT GGAGATCAAT GGAAAACAGG TCAAAGTTGT CAGCAAGAGA GACCCAGCTG AAATCCCGTG GGCTGATCTT GGAGCTGAGT ATGTTGTTGA GTCTTCGGGG GTATTCACCA CCGTTGGACA AGCTTCATCA CATTTGAAGG GTGGCGCCAA GAAAGTCATC ATTTCTGCAC CTTCAGCGGA CGCGCCCATG TTCGTTGTTG GAGTAAATGA GAAGACATAC CAACCTAACA TGGATATAGT CTCCAATGCA AGCTGTACCA CCAATTGCCT TGCACCTCTT GCCAAGGTGG TGCATGAGGA ATTTGGAATT CTTGAAGGCT TGATGACAAC AGTCCACGCG ACCACAGCTA CTCAGAAAAC TGTGGACGGC CCATCAATGA AGGACTGGAG AGGAGGCAGA GGCGCTAGTC AAAACATCAT TCCTAGCTCA ACCGGCGCTG CAAAGGCTGT TGGTAAGGTC CTTCCGGAAC TCAATGGAAA ACTAACGGGA ATGGCCTTCC GTGTCCCAAC ACCAAATGTT TCTGTTGTGG ATTTAACTTG TCGACTTGAG AAGGATGCAT CTTATGAAGA CGTTAAGGCA GCCATAAAGT TTGCATCAGA AGGACCACTT AGGGGCATTC TTGGATATAC AGAAGAAGAT GTCGTCTCTA ATGATTTTCT TGGAGATTCA AGGTCAAGTA TCTTTGATGC TAATGCTGGG ATTGGATTAA GCAAGTCCTT CATGAAACTT GTCTCCTGGT ATGACAACGA ATGGGGTTAC AGTAACCGAG TCCTTGACCT GATAGAGCAC ATGGCGTTAG TTGCAGCCAG CTGCTAAA
Length1368
Protein Sequence
Protein Residue
Map Locationscaffold_1: 6519886.. 6522994
Download Sequence
A.thaliana
AGI-codeAT1G16300.1
Descriptionglyceraldehyde-3-phosphate dehydrogenase of plastid 2
TAIR curator summaryEncodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development, dwarfism and sterility. GAPCps are important for the synthesis of serine in roots.
Alias[GAPCP-2][glyceraldehyde-3-phosphate dehydrogenase of plastid 2]
Gene coexpression
MR
MR Locus Description
6.08276 Ahg472566
7.34847 Ahg488950 monogalactosyldiacylglycerol synthase 2
11.225 Ahg931035 monogalactosyldiacylglycerol synthase type C
12.2474 Ahg487132
15.2971 Ahg904746 purple acid phosphatase 17
16.3707 Ahg483646 SPX domain gene 3
17.8606 Ahg493543 purple acid phosphatase 23
18.1659 Ahg473436 plastidial pyruvate kinase 3
19.2873 Ahg492318 U-box domain-containing protein kinase family protein
19.4422 Ahg936924
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression