Detail



ID : Ahg475595

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|475595|fgenesh2_kg.2__725__ATCG00340.1
Sequence
ATGGCATTAA GATTTCCAAG GTTTAGCCAA GGCTTAGCTC AGGACCCCAC TACTCGTCGT ATTTGGTTTG GTATTGCTAC CGCACATGAC TTCGAGAGTC ATGATGATAC TACTGAAGAA CGTCTTTATC AGAATATTTT TGCTTCTCAT TTCGGGCAAT TAGCAATAAT TTTTCTGTGG ACTTCCGGAA ATTTGTTTCA TGTAGCTTGG CAAGGCAATT TTGAGACATG GGTACAAGAC CCTTTACATG TAAGACCGAT TGCTCATACT ATTTGGGATC CTCATTTTGG TCAACCGGCT GTGGAAGCGT TTACTCGAGG AGGTGCTCTT GGCCCGGTGA ATATAGCTTA CTCTGGTGTT TATCAGTGGT GGTATACAAT CGGTTTACGT ACTAATGAAG ATCTTTATAC TGGAGCTCTT TTTCTATTAT TTCTTTCTGC CCTATCCTTA ATAGGGGGTT GGTTACACCT ACAACCAAAA TGGAAACCAA GAGTTTCGTG GTTCAAAAAT GCTGAATCTC GTCTGAATCA TCATTTGTCA GGATTATTCG GGGTAAGCTC CTTGGCTTGG ACAGGTCATT TAGTCCATGT CGCTATTCCT GCATCCAGGG GGGAATATGT TCGATGGAAT AATTTCTTAA ATGTATTACC GCATCCCCAA GGGTTAGGCC CACTTTTTAC GGGTCAGTGG AATCTTTATG CTCAAAATCC CGACTCAAGT AGTCATTTAT TTGGTACCTC CCAAGGATCC GGAACTGCCA TTCTAACCCT TCTTGGGGGA TTCCATCCAC AAACGCAAAG TTTATGGCTA ACCGATATGG CACATCATCA TTTAGCTATC GCAATTCTTT TCCTCATTGC GGGTCATATG TATAGAACGA ACTTTGGAAT CGGACACAGT ATAAAAGATC TTTTAGAAGC ACATATTCCT CCGGGAGGAC GATTGGGGCG TGGGCATAAG GGTCTTTATG ACACAATCAA TAATTCGATT CATTTTCAAT TAGGCCTTGC TCTAGCCTCC TTAGGAGTTA TTACTTCCTT GGTAGCTCAA CACATGTACT CTTTACCTGC TTATGCGTTC ATAGCGCAAG ATTTTACGAC TCAAGCTGCG TTATATACCC ATCACCAATA TATTGCAGGA TTCATCATGA CAGGAGCTTT TGCTCATGGA GCTATCTTTT TTATTAGAGA TTACAATCCA GAACAGAATG AGGATAACGT ATTAGCAAGA ATGTTAGACC ATAAAGAAGC TATCATATCC CATTTAAGTT GGGCCAGCCT CTTTCTAGGG TTCCATACTT TGGGACTTTA TGTTCATAAT GATGTCATGC TTGCTTTTGG TACTCCCGAA AAACAAATCT TGATCGAACC CATATTTGCC CAATGGATAC AATCCGCTCA TGGGAAAACT TCATATGGAT TTGATGTACT TTTATCTTCG ACAAGTGGCC CAGCATTTAA TGCGGGTCGA AGCATATGGT TGCCTGGCTG GTTAAATGCT ATTAATGAGA ATAGTAATTC ATTATTCTTA ACAATAGGCT TGGTTCATCA TGCTATTGCT TTAGGTTTAC ATACAACTAC ATTGATCTTA GTAAAAGGTG CTTTAGATGC ACGTGGTTCC AAGTTAATGC CAGATAAAAA GGATTTCGGG TATAGTTTTC CTTGCGATGG TCCGGGACGA GGTGGTACTT GTGATATTTC GGCTTGGGAC GCATTTTATT TGGCAGTTTT CTGGATGTTA AATACTATTG GATGGGTTAC TTTTTATTGG CATTGGAAAC ACATCACATT ATGGCAGGGT AACGTTTCAC AGTTTAATGA ATCTTCCACT TATTTGATGG GACGGTTAAG AGATTATCTA TGGTTAAACT CTTCACAACT TATCAATGGA TATAACCCTT TTGGTATGAA TAGTTTATCA GTCTGGGCAT GGATGTTCTT ATTTGGGCAT CTTGTTTGGG CTACAGGATT TATGTTCTTA ATTTCCTGGC GTGGTTATTG GCAGGAATTG ATTGAAACTT TAGCATGGGC TCATGAACGC ACACCTTTGG CAAATTTGAT TCGCTAG 
Length2067
Protein Sequence
Protein Residue
Map Locationscaffold_2: 8553321.. 8555387
Download Sequence
A.thaliana
AGI-codeATCG00340.1
DescriptionPhotosystem I, PsaA/PsaB protein
TAIR curator summaryEncodes the D1 subunit of photosystem I and II reaction centers.
Alias[PSAB]
Gene coexpression
MR
MR Locus Description
4 Virus0862
10.247 Ahg338284
10.583 Virus3719
10.7703 Ahg930767
12.2474 Ahg952594 Acyl-CoA N-acyltransferases (NAT) superfamily protein
14.6969 Virus0160
16.4317 Ahg945478 Protein of unknown function (DUF630 and DUF632)
17.7482 Ahg359264 cofactor of nitrate reductase and xanthine dehydrogenase 2
19.975 Ahg907898 ribulose-bisphosphate carboxylases
24.1661 Virus1635
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression