| Annotation |
|---|
| Description | jgi|Araly1|476863|fgenesh2_kg.2__1993__AT1G77000.1 |
| Sequence |
AATCCTTATT TCCCTACATT TGTCGTCTTT TGATGTCCTA AACTCAGAGA TATTTATCTC TCCCCTCTCT CTCTCTCTCT CTCTCATTCT CTTATTTACT TTTGATCTTG TGGTGTTAGA ATCAAAGAAA CCGCTTAAAG ATGGTGAGTG AAGGAGCAAC AAGAAAGGAA CTTAACCTAT GCTTCGAGAA GATGAAGATG GAAAGAATCG TGATCTCTGA GTGGAAAGAT ATCCCTGTGG AGCTTCTTAT GAGGATCCTA AACCTTGTTG ATGATCGGAC GGTGATCATT GCTTCTTGTA TTTGTAGTGG TTGGAGAGAT GCTATTTCCC TTGGCCTCAC TCGTCTCTCC CTCTCTTGGT GCAAGAAGAA TATGAACAGT TTGGTTCTTT CTCTTGCTCC CAAATTCGTA AAGCTTCAGA CTTTAGTACT GCGACAAGAC AAACCGCAGC TTGAGGACAG CGCGGTGGAA GCCATAGCAA ATCACTGTCA TGAGCTACAC GATTTGGATT TAAGCAAAAG CTTGAAACTT ACTGACCATT CCCTATATTC TCTGGCTCGT GGTTGTACTA ACCTCACTAA GCTCAACCTT AGTGCCTGCA CTTCGTTCAG CGACACTGCT CTCGCGCATT TGACAAGATT TTGCAGGAAG CTCAAAATTC TGAATCTTTG TGGTTGTGTT GAAGCTGTAT CTGACAATAC ATTGCAGGCT ATTGGAGAAA ACTGCAATCA GTTGCAGTCA CTAAACTTGG GATGGTGTGA GAATATAAGT GATGATGGAG TTATGAGTTT AGCTTATGGT TGTCCTGATT TAAGAACCCT TGATCTTTGT GGTTGTGTTC TAATTACAGA TGAGAGTGTT GTGGCTTTGG CGAATCGGTG TATACACTTG AGGTCATTGG GATTATACTA CTGCAGAAAC ATTACCGACA GAGCGATGTA CTCTTTAGCT CAGAGCGGAG TAAAGAACAA ACACGAGATG TGGCGAGCGG TAAAGAAAGG CAAATTCGAT GAAGAAGGAC TAAGAAGCCT TAACATTAGC CAATGCACTT ACCTAACACC TTCAGCGGTT CAAGCGGTCT GCGATACATT CCCTGCACTC CACACTTGCT CAGGCAGGCA TTCACTTGTC ATGAGCGGTT GTCTGAATCT ACAATCTGTT CATTGTGCTT GTATCCTTCA GGCTCACCGG GCTCACCGCA CCCACACCGC TTTCCCTCAC CCGGCTCATT GAACCGGTGT GTGGTATGTG TGTACATACA TATAAGCTTA TGGTCTAAAT AAAGCTTCTT TAAGTTTCTT CTTTGTCTTT GATACAATCT CAAGATTTT |
| Length | 1329 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 16462639.. 16464479 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G77000.1 |
| Description | RNI-like superfamily protein |
| TAIR curator summary | AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. AtSKP2b may also be involved in the degradation of KRP1/ICK1, a CDK inhibitor. |
| Alias | [ATSKP2;2][SKP2B][ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 14.3178 |
Ahg474793 | Chaperone DnaJ-domain superfamily protein |
| 14.6969 |
Ahg894730 | transposable element gene |
| 25.219 |
Ahg493915 | PQ-loop repeat family protein / transmembrane family protein |
| 37.5233 |
Ahg935980 | glutathione S-transferase (class zeta) 2 |
| 38.9615 |
Ahg472494 | Major facilitator superfamily protein |
| 44.0454 |
Ahg475836 | Rubber elongation factor protein (REF) |
| 49.3964 |
Ahg477991 | Drought-responsive family protein |
| 51.7107 |
Ahg478447 | DRE/CRT-binding protein 2B |
| 53.2447 |
Ahg934838 | Integrase-type DNA-binding superfamily protein |
| 65.4981 |
Ahg346360 | cytochrome P450, family 704, subfamily A, polypeptide 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|