| Annotation |
|---|
| Description | jgi|Araly1|478089|fgenesh2_kg.3__790__AT3G07610.1 |
| Sequence |
ATGGATTCTG TGGAGGAGAA CGGACGCGGT GGTCTCCGTA GGCAGCGGAG GGTTTCTACG AAGCTGGCGA ATTACGTAGA TCCTCCGACC GACGACGAAG AAGATGGAGG ACCCAACAAG CGAAAGGGCA AAAGGGGTGT ATATGGGCCT CGGAAAAAGA CAGCGAAGGA AGACGAGGAG AAGCAAAAGA ACGAAATTGA TGAAGCAAAC GGAGTCACTG GTCTGGTCAA GGAAAAGAGA GCCGCTACTA AGATTGTGAA AGGCAAAGAC CTCATTACTG AAGCTTCTGG AAGCAAGCCC ATGGTAGCAA AGGGAAAAAG GACTAAGAAG GAGAATGAAA TCGATGGTGA GATTCCAACT AAGCCGGGCA AGAAGCCCAA GACTACAGTA GACGAGAGAA TCATTGGTTA CAGACCGGAC AATATGTGCC ACCAATGTCA AAAGAGCGAT AGGATTGTTG AACGGTGTCA GACCTGCAAG AGCAAGCGTT ATTGTCACCC TTGCTTAGAC ACTTGGTATC CACTTATAGC AAAAGAAGAT GTTGCCAAGA AATGCATGTT CTGCTCTAGT ATTTGCAATT GCAGAGCATG CTTGCGTCTA GATACTAAAT TGAAAGGGAT AAATTCGAAG CTCATCCTCA ATGAGGAAGA AAAGGTTCAA TCCTCTAAGT TTATTTTGCG GAGTCTTCTC CCACATCTAA AAGGAATAAA TGATGAACAA GTCGCAGAGA AGGAAGTTGA GGCCAAAATA TCCGGACTGA AGTTTGAAGA GGTTAGGCCC CAAGACGCTG AAGCTTTCCC CGATGAAAGA CTATACTGTG ATATCTGCAA GACTTCTATC TATGATCTCC ATAGGAATTG CAAGGCATGT AATTGTGATA TCTGCCTTAG CTGTTGCCTT GAGATCCGCA ATGGAAAGGC TCTGGCATGT AAGGAGGATG TGTCTTGGAA TTATATTAAC CGAGGTTTAG AGTATGAACA TGGAGAAGAA GGAGAAGTTA TTGAAAAGGC GGAGAATACG CTAGATGATA AGCTGAAAGA TAAGCCGAAA GATAAGCCGG ATGATAAGCT GGATGATAAG CCGAAGGGTA AGCCAAAGGT TAAACCGAAG GGTAGGCCGG ATGATAAGCC GAAGGGTAAG CCAAAGGGTA AACTGAAGGG TAAGCAGGAT GATAAACCGG ATGTTAAGCC GAAGGGTAAG CCGATTAATA CAGACCATAT GAAGTACCCT TCTATGTGGA AAGCAAATGA AGCTGGGATC ATTACTTGTT ATTGTGGTGC TGGGGAGTTA GCGTTGAAAC GACTACTTCC GGATGGTTGG ATATCTGAGT TGGTCAACAG AGTAGAAAAA ACTGCTGAAG CTAGTGAGCT TTTGAATTTA CCTGAAACGG TTTTGGAGCA ATGCCCTTGT TCTAACTCTG ACAGTCATAT TGACATAGAC AGCTCTAATT TGTTGAAAGC TGCTTGTCGA GAAGGTTCAG AAGACAATTA TCTATACTCT CCAAGTGTAT GGGATGTTCA ACAAGATGAT TTGAAGCATT TTCAGCACCA TTGGGTAAAA GGCGAGCCTG TGATTGTGAG AAATGTGCTT GAAGCAACAT CTGGTTTAAG CTGGGAACCA ATGGTAATGT TTCGTGCCTG CCGCCAGATA AGCCATGTCC AGCATGAAAC ACTTACGGAT GTTGAAGCTG TTGATTGTTT GGACTTCTGT GAGGTAAAAG TTACTCTTCA TGAATTTTTT ACTGGATACA CGGATGGCCG ATATGATCGT ATGGGTTGGC CTCTAGTTCT GAAACTGAAA GATTGGCCTC CAGCTAAAGT CTTCAAAGAT AGCTTGCCAC GTCATGCTGA GGAGTTCTTA TGTAGTTTGC CTTTGAAGCA TTACACTCAC CCGGTTAATG GACCTTTGAA TCTTGCTGTC AAGCTTCCCC AAAACTGCTT GAAGCCAGAC ATGGGACCAA AGACGTACGT TGCTTCTGGA TTTGCTCAAG AATTTGGCCG TGGAGATTCT GTTACTAAGC TCCATTGCGA CATGTCTGAT GCGGTGAATA TTTTGACGCA CATATCTGAA GTGCCCATTG ACGCCAAGAT GCAAGATGGA ATGGGGAAAC TGAAAAAGAA GCATGCCGAA CAAGATCTCA AGGAGCTGTA TAGCTCAGTA GCTAACCAGG AGGAAATGAT GGAGATTCTT GAAAATTCCA GACAACAAGT CCAAAATGTT GAAACTGATG ATGGAGCTCT TTGGGACATT TTCCGTAGAG AAGATATTCC TAAATTAGAA AGTTACATTG AGAAACATCA CAAGGAGTTC AGACATCTCT ACTGCTGTCC TGTGTCTCAG ATTGCTCATC CTATACATGA CCAGAATTTC TATCTGACGC GGTATCATAT AATGAAGCTG AAAGAAGAAT ATGGCATTGA ACCTTGGACC TTCAATCAGA AGCTTGGGGA TGCTGTTTTA ATACCTGTAG GTTGCCCTCA TCAAGTTAGA AATTTGAAGT CCTGCACAAA GGTAGCTTGT GACTTTGTCT CACCTGAAAA TGTCAGCGAG TGTTTACACT TGACAAAACA GTATCGTCTA CTTCCACCAA ATCATTTTGC TAAAGAAGAC AAGTTAGCGG TTAAGAAGAT GATAATCCAT GCAGTTGATA AAGCTCTCAG AGACTTAAGT GGAGAGAAGT CTCCAGAACC CAAAGAGAAG AAGAGAAGTA CGAATTCAAG GAAGACAACA GCCAGGACAG TTGTTAAGGC TCTCAAAGAC TTACCTCCAA GTGAAAAGAA GTCTTCGGAA GCAGCTGAAG AGGAGATATC AAATGGGATA GTCAATGCAA TCGATAAGGC TCCCAAAGAC TTCCCTCCAA GTGAACAGAA GTATTCCGAA GCCGAAGAGG AGATATCAAA TGGGATAGTC AATGCAATGG ATAAGGCTCT CGAAAACATA TCTTCAAGCG AAAAGAAGTG TCTGGAAGAG GAAGGGGTGA AAAGACCAAA GATTGTGAGG ACATATGAGC GCAGAAAAAA GCAGAGAAGT GAGAAGACCA ACGCGTAG |
| Length | 3048 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 3004177.. 3011678 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G07610.3 |
| Description | Transcription factor jumonji (jmjC) domain-containing protein |
| TAIR curator summary | IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or he CMT3 non CG-cytosine methylase. |
| Alias | [IBM1][increase in bonsai methylation 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.44949 |
Ahg942061 | RNA recognition motif (RRM)-containing protein |
| 5.2915 |
Ahg478494 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 5.91608 |
Ahg488375 | RNA-binding KH domain-containing protein |
| 6.245 |
Ahg931278 | RING/U-box superfamily protein |
| 6.9282 |
Ahg480424 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 8.88819 |
Ahg490654 | FMN-linked oxidoreductases superfamily protein |
| 11.225 |
Ahg925100 | RNA helicase, ATP-dependent, SK12/DOB1 protein |
| 19.3391 |
Ahg913933 | |
| 22.2486 |
Ahg480442 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| 22.2711 |
Ahg938748 | lysophosphatidyl acyltransferase 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|