| Annotation |
|---|
| Description | jgi|Araly1|479470|fgenesh2_kg.3__2171__AT3G19570.2 |
| Sequence |
GTTCATCAAA CCTCCGAAAA AGCGAAAATT CAGAAAACCC CAAATCCAGA AACCCCACCT TTCTCCAATT CTCACATCTC TCTTCGCTCT GAAGCAAAGA AAAATATGCA AAATCCTTTG TGAAACAAAA AAAATCACAT TTGATTGCAA AATTTATTTA TTTTGTCTAA GGTAGAGAGT GAGGAGAAGA AACTGACAAA TCAAATCTCT GTAATGCACT GTGAAGATCT CGAAGACCAA GACGAAGAAG AAGAAGAAGA CGAAGCAGCG AGTGATTTCT CGTAGAGAAT GGTGGCTGCG ATTCCTCAAG CAGCAGCTAT TTCCAGCACC GACTCTAAGA ATCCACCTCG AGATCGACAG GACAAACCTC AACTCACAGC TAACAATGGC GGACTACAAC GAAGACCTAG AGCTGCTAAA AGTGTCCCCT CGCGCTACTT ATCTCCTTCT CCTTCTCATC CCTCGACCAC CACCACTGCT ACATCTACTT CCTCTTCTTC TTCGTCTGCG GTACTGAGGA CAAGTAAGCG ATATCCTTCC CCTTTGCTCT CTCGCTCGAC GAATTCTGCT TCTAATTTGG TTAAGACGCC TTCCTCGTTG CCCAAACGGT CTCAATCGGT GGACCGTCGT CGTCCGTCGG CAGTTTCTGA CACCAGAACC GAAATGTCGG CGGCGACGAA GATGCTTATC ACTTCTACTA GGAGTTTATC TGTTTCTTTT CAAGGAGAGG CGTTTTCTCT TCCGATTAGT AAGAAGAAGG AGACTACCAC GCCTGTTTCT CACCGGAAAT CTACTCCTGA GAGGCGGAGA GCGACACCTG TTCGAGATCA GAGGGAGAAT TCTAAGCCGG TGGATCAGCA ACTGTGGCCA GGTGCTTCTC GGAGGGGAAG TTCTGACTCT GTTGTGCCGA ATTCGCTTTC TAGAAGCGTG AATTGTGACA GTGATAGTAG TGGGAAGCTT GGATCTGGCT TTGTGGGAAG GTCAATGTTG CAGCATTCTC AGAGTTCTAG GGTTTCTGTT GATGAGAGAT TGAATTTAGA TTTTGGAGGA GGTGATGGAA TTTTGGAAAT GAGAGATGAG AGCAAGACAA GACCAAGCAC ATATCCAAAA TTGGGTTCTA GTGTTTCGTG TGACTTTACT GCATCTGATA CTGATAGTGT TTCATCTGGT AGCACTAATG GTGCGCAGGA ATGTTGTTCT GGTGTCAATG GTGAGGTTTC TAAAACAAGG AGCTTGCCGC GTAATAATGC TATGGCTTCT GCTAAATTCT GGCAAGAGAC TAATAGCCGG TTAAGGCGGT TTCAGGATCC TGGCTCACCT CGATGTTCTA GCCCAAGTTC GAGAATCAGT AGTATCTCAT CATCAAAGTT CAGTCAATCG AAACGGTTCT CTAGTGATAG TCCGTTGACA TCATCTCCTC GCGGTATGAC TTCTCCAATA AGGGGTGCTT CTCGCCCTGC TTCACCAAGT AAGCTTTGGG CAACAGCTAC ATCAACTCCA GCTAGGGCAC TTTCTAGTCC TTCCCGAGTG AGAAATGGAG TTTCTGAACA AATGAATGCT TATAACCGCA CCTTGCCTTC AATTCTTTGT TTCTCTGCTG ATATTAGGAG GGGGAAAATT GGGGAGGATC GCGTTATGGA TGCCCACTTG TTGAGGCTTC TGTATAACCG TTACCTGCAA TGGCGGTTTG CCAATGCGAG GGCGGACTCT ACTTTCATGG TACATAGACT GAGTGCAGAG AAAAACCTCT GGAACGCATG GGTATCAATC TCGGAACTAC GCCATTCTGT CACTCTGAAA CGGATCAAGT TGCTTTTGCT GAGGCAAAAA CTGAAACTAG CTTCCATCTT GAAGGAGCAG ATTGGTTATC TAGAAGAATG GTCTCTTATG GACAGAGATC ATTCAAATTC TTTGTCAGGA GCGACTGAAG CTTTGAAAGC GAGCACGCTT CGTCTTCCAA TTAGTGGAAA AGCCTTGGTT GATATTCAAG ATCTCAAGCA TGCTGTTAGT TCAGCCGTTG ATGTCATGCA CGCTATGGTG TCTTCGATTT TCTCGCTGAC ATCGAAGGTG GAGGAAATGA ATTCAGTAAT GGCGGAAATG GTGAATATCA CTGCGAAAGA AAATGTTTTG CTTGAACAGT GTCAAGGATT CTTATCAAGA GTAGCAGCAA TGCAGGTAAC GGACTGCAGC ATGAAGACGC ACATAATACA ACTAAGCCGG ATATAAACCA ACCTGACTTC ACAACTGTAG AAACTGATCT CCTCTGAGCT TACACGACTA CTCACGCCAC TTCACAACAT GAATGATTTC TAACAACGTT TTAGACTCCC ACGGCCTTCC CTTGGATTCC CAAAACCGCC TTTATTGTTT TCAACCGGAT CAAGGTGAGA TTCTCGGGAT ATCTGTTTCA CTGCACTCTG GGATTCGACG TTTTTTTATT TAAGTTCCTG CATTGGAGAT TTACAGAAGA GAGAGGTAAA AGAATAGAAT GTGGTGTTTA GTTTTGCCTA TGAAGTTAGC TTAATTGTAT ACAGAAAAAG CTTCTAATAG ATCTTTTGCT TTTGTTCTCT AATGAAGAAG AAAAAAAATG TACATAAAGA TGAAGATATC AATCTCTCTT ATTTAGAG |
| Length | 2628 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 7986205.. 7990202 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G19570.2 |
| Description | Family of unknown function (DUF566) |
| TAIR curator summary | Encodes SCO3 (snowy cotyledon3), a member of a largely uncharacterized protein family unique to the plant kingdom. The sco3-1 mutation alters chloroplast morphology and development, reduces chlorophyll accumulation, impairs thylakoid formation and photosynthesis in seedlings, and results in photoinhibition under extreme CO(2) concentrations in mature leaves. SCO3 is targeted to the periphery of peroxisomes. |
| Alias | [QWRF1][SCO3][QWRF domain containing 1][SNOWY COTYLEDON 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 14.3527 |
Ahg944131 | MRG family protein |
| 17.088 |
Ahg478343 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 24.4949 |
Ahg476144 | Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like |
| 27.2397 |
Ahg471133 | |
| 41.3159 |
Ahg941512 | outer envelope protein of 80 kDa |
| 44.699 |
Ahg943828 | Pathogenesis-related thaumatin superfamily protein |
| 45.7165 |
Ahg938716 | Protein of unknown function (DUF288) |
| 67.8822 |
Ahg927703 | O-fucosyltransferase family protein |
| 73.8241 |
Ahg358300 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 75.0067 |
Ahg481823 | RHOMBOID-like 1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|