Detail



ID : Ahg479818

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|479818|fgenesh2_kg.3__2519__AT3G23100.1
Sequence
ATTATGATCG GAGTTGACTC AAAATCTTCG TCGGCGACTT TGATTTGAAA ACAATGGTTG AATCGGAGAA AACGAAACAC ACATGTCTCC GACTCGAAAT CTCCGGCGCC GATCCAATTT TCGTCAAAGG AACTTGGCAC CACTCTCGTT TCGATATCTC CGTCACCGAT GGCTCCTCCT CTTGGATTTG CAATGCGACG GAGGAGGAAG TGGCGGAGAG AGCAGCACAA TGGGATCAGC CTGTATCGGA GTATTTAGAG CTCGCTGAAC GTTACTTAGG GTTTCAACAG CCAAATTCTG TCTATGGATT CTCTGATGCT CTTGAGGGAT CTAAACGGCT CTCTTGGACG TTTGAGAAGG AAGGGACTAA ACTTGAGTGG AGGTGGAAGT GTAAACCATC ACATGATAGC AAGAAGATCA CTGTTGGGAT CTTGGATTTT CTTATGGAGG CTAATATAAG GCTAAGTGAA GAAGTTGTGA ACAAGACGAG ATCTTTTGAG AAGATGAAAA GTGAAGCTGA GAGATGTCTC GCACAAGGTG AAAAACTCTG CGATGAAAAA ACAGAGTTTG AGAATGCAAC TTATGCAAAG TTTCTTTCTG TTTTAAATTC AAAGAAGGCG AAACTGAGAG CACTAAGGGA CAAAGGAGAT TCAGTGAGAG CAGTTGAGGA GGAAGAGTCG ACAGACAAAG CTGAAAGCTT TGACAGTGGA AGAAGTGACA ATGAGCAGAG CGAGGAAGAA GCCTCAAAGA AGGCATCAAG CAGCAAAGCC CGTGGCCGAA AGAGAGCTGT ACGCAGCTAA AAGATTCCCC TGCCTTGAGA TTT 
Length823
Protein Sequence
Protein Residue
Map Locationscaffold_3: 9825493.. 9826912
Download Sequence
A.thaliana
AGI-codeAT3G23100.1
Descriptionhomolog of human DNA ligase iv-binding protein XRCC4
TAIR curator summaryA. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. Yeast two-hybrid analysis demonstrated a strong interaction between A. thaliana DNA ligase IV and the A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. This interaction is shown to be mediated via the tandem BRCA C-terminal domains of A. thaliana DNA ligase IV protein.
Alias[XRCC4][homolog of X-ray repair cross complementing 4]
Gene coexpression
MR
MR Locus Description
22.0907 Ahg354710 Subtilase family protein
23.4307 Ahg493738 ARM repeat superfamily protein
29.6985 Ahg938255
39.1791 Ahg482620
66.7832 Ahg482498 poltergeist like 1
77.923 Ahg940754
78.5875 Ahg936236
81.878 Ahg889155 cytokinin oxidase 4
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression