Detail


ID : Ahg480131

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|480131|fgenesh2_kg.3__2832__AT2G05170.1
Sequence
TTTTCATCAA ATGCAAATGA CCGTTTCGGC CGTCTACGGA TTGCGACCAA ATTAGCTTGA TCTGATCGGA AAAAACAGAA GAAAACCCTA GAAATTCCTC CGGATTCGAA TTCTCGATTC GATTCAATGT ACCAGTTGAG AAAATTCGAC TTCTTCGAAG AGAAATACGG AGGTAAGATC CCTGATGATG TGACCGGAGA TATACAATGT TGCTCGAGTG GCCGTGGTAA AGTCGTCATC GGCTCTAACG ACGGATCCGT CAGCTTCATC GATCGCGGTA TCAAGTTCGA TTCCGGTTTC CAAGCTCACT CTTCCTCCGT CCTCTTCCTT CAGCACCTCA AGCAAAGGAA TTTCCTTGTC ACCGTTGGAG AAGATGAACA AATATCGCCG CAGCAGTCAG GGATGTGTCT CAAGGTATTT GACCTTGAAA AAGTTCAGGA GGAAGGCACT AGTTCCTCGG CTCCTGAATG CATTGGTATT CTAAGAATAT TCACTAATCA GTTTCCTGAA GCTAAGATTA CTTCTTTTCT AGTCTTGGAG GAAGTTCCAC CCATATTGCT TATAGCCATT GGCTTAGATA ATGGCTGCAT TTATTGTGTC AAAGGAGACA TTGCAAGAGA ACGTATCACT CGGTTTAAGC TTCAAGTGGA TGGACGATCT ACGATTACAG GCTTGGGGTT TAGGATGGAT GGTCAAGCGC TTCTGTTGTT TGCTGTAACT CCAGACTCAG TCAACTTGTT TAGTATGCAG GCGCAACCAC CTAAATTGCA GACTTTGGAT CATATTGGGG GCAGTGTGAA TACTGTTACA ATGAGTGACC GCTCGGAATT AATAGTTGGT CGACCTGAGG CTGTTTATTT CTATGAAGTT GATGGACGTG GTCCTTGCTG GGCTTTTGAA GGAGAGAAAA AATTCATGGG GTGGTTCCGT GGCTACCTTT TATGTGTTAT TGCTGACTCT AAAACCGGGA ACACTGTTTT TAATGTCTAC GACCTCAGGA ATCGGCTTAT AGCATATAGT ATAGTCGTTG GTAAAGTCTC CAACATGCTC TGTGAATGGG GAAACATAAT ACTTATAACG GCTGACAAAT CATTATTGTG CATCACCGAG AAGGATATGG AAAGCAAGTT AGATATGCTG TTCAAGAAAA ACCAGTACAC AGTAGCGATT AATCTTGTCC AGAGTCAGCA TGCCGATGCT GCTGCTACCG CCAATGTGAT GAGGAAGTAT GGAGATCATT TGTATGGCAA ACAGGACTTC GACGAAGCTA TGTCTCAGTA CATCAACACA ATTGGTTATC TTGAACCATC ATTTGTGATA CAAAAGTTTC TGGATGCACA GAGGATCTAC AATCTTACTA ATTACCTGGA GAAGTTGCAT GAGAAGGGTC TAGCATCAAA AGACCACACA ACTCTTTTGC TAAACTGTTA CACTAAGTTG AAGGATGTAG AAAAGCTGAA CACTTTCATT AGAAAAGAAG ATGGCATCGG TGAGCTCAAG TTTGATGTGG AAACAGCCAT TAGGGTCTGT CGTGCAGCTA ATTACCATGA GCATGCAATG TACGTTGCAA AAAAGGCAGG AAAACATGAG TGGTATTTGA AAATTTTGCT TGAAGATCTT GGAAACTATG ATGAAGCCCT GCAATATGTT TCAAGTCTTG AACCCAGTCA AGCTGGGGTA ACAATAAAAG AGTATGGTAA GATTCTTATA GAGCACAAGC CGAAAGAGAC TATTGATATA CTCATGCGAC TTTGCACTGA GCAAGGGACT CCTAATGGTG TGTACCTGTC CATGTTGCCA TCACCTGTGG ACTTCATCAA TGTGTTTGTT CAGCATCCAC ATTCATTAAT GCATTTTCTC GAGAGATATG CTGAAATAGT GAAGGATTCA CCTGCTCAAG CAGAAATCAA TAACACACTC TTGGAGTTAT ACTTGTCCAG GGACTTGAAT TTTCCATCAA TCTCTCTATC AGAAAATGGT CTAGATCAGG ACTTAACAGA TCATTCAGTA GCACCTGCGG TGTCTAAAGC TGATCCTGAA AAGAGGACAA ATACTGATTC GAAGGATGCA ATGGAGAAGG ATTGTACCGA AAGACAACAG AAGGGACTGG AGTTGCTTAA AATGGCATGG CCGTCAGACC TAGAGCAACC CCTCTATGAT GTTGACCTTG CTATAATTCT TTGCGAGATG AATTCGTTCA AGGAGGGACT TCTGTATCTG TATGAAAAGA TGAAACTTTA CAAGGAGGTT ATTGCTTGCT ACATGCAGAA TCATGATCAC GAGGGACTGA TTGCGTGCTG CAAAAGATTA GGTGATTCTG GCAAGGGAGG GGATCCGTCT CTTTGGGCAG ATCTTCTCAA GTATTTTGGT GAAATTGGAG AGGACTGCTC CAAAGAAGTG AAGGAGGTTC TTACTTATAT TGAACGGGAT GATATTTTAC CTCCAATCAT TGTTCTTCAG ACCCTTGCAA AGAATCCATG CCTCACACTC TCTGTCATCA AAGACTATAT AGCCCGGAAA CTTGAACAAG AATCAAAGAT AATTGAAGAG GACCGGCGAG CAGTAGAGAA GTATCAGGAA ACGACAAAAA ACATGAGAAA AGAGATTGAA GACCTCAGGA CGAATGCCAG AATATTTCAA CTTAGCAAGT GCACTACTTG CACTTTTACA TTGGATATCC CAGCCGTCCA TTTCATGTGT ATGCACTCAT TCCATCAACG CTGCCTCGGT GACAACGAAA AAGAATGCCC TGAGTGTGCT CCCGAGTACA GATCTCTGAT GGAAATGAAG AGAAGTTTGG AGCAGAACTC GAAAGACCAA GATCTGTTCT TCCAGCAAGT GAAAAGCTCG AAAGACGGGT TTTCTGTGAT TGCAGAGTAC TTTGGGAAAG GAATCATCAG CAAAACTAGT GATGCAACAT CTTAATTTTC TTCACGCCTG AGGGGAAGGC GGCTAAAACA TCTCAAACTC AAGTGTGGCC GACATAAACT TTGTGGCATC TGTGAATGTG AGGTATCCTT TGAATCTACT TTATCGGCGG AGATATTGTG TAAGAGTGAG TTGCTAGTGA AGTTGGGACA GGGTTAATGC TTCTTCTTGT ATGCATTTCT GAGATTCTGT GCCATGAATC AGGAAAAGAT GCATAGATGT TGACAAGTTA TAAAGTTTAT TTTTAAAGGA GAACGTTTAC AGTAAATATG TTGTTGTGTT TGATTTGCAC TCATTCTGGT AAAAGACTTG CTCATTTGGA GCAATTTCTA AATAATTGCT C
Length3271
Protein Sequence
Protein Residue
Map Locationscaffold_3: 12917169.. 12921104
Download Sequence
A.thaliana
AGI-codeAT2G05170.1
Descriptionvacuolar protein sorting 11
TAIR curator summaryHomologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis.
Alias[ATVPS11][VPS11][vacuolar protein sorting 11]
Gene coexpression
MR
MR Locus Description
9.69536 Ahg939446 transducin family protein / WD-40 repeat family protein
10.247 Ahg933693
10.4881 Ahg488863 staurosporin and temperature sensitive 3-like A
15.6205 Ahg484854 clone eighty-four
16.0624 Ahg902422 Late embryogenesis abundant protein, group 2
21.7715 Ahg496602 phosphatidylinositol 4-OH kinase beta1
32.9393 Ahg487710 ATP synthase alpha/beta family protein
34.9857 Ahg484506 Cytochrome C1 family
36.4692 Ahg489818 Oxidoreductase family protein
43.0581 Ahg926473 UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression