Detail



ID : Ahg482991

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|482991|fgenesh2_kg.4__2051__AT2G39700.1
Sequence
AACAAACCTA ACTCTTTCTC TATACAAGAG CGCAACCTCG AAAGCGCTCT TGTTCTTTCT TCATTTTCTC CTTAAGAATC ACCCTCATAG TAATTTTAGA ACTCTCCTTT TTAGTAAATT ACACTCAAAA TGGCTATTAA ACTAGTAATT CTCTTTACCA CATTTGTCCT TTTTAGCCTC GCCGACGCTA GAATCCCCGG CGTTTACTCC GGCAGCGCAT GGCAAAACGC ACACGCCACT TTTTACGGTG GCAGCGACGC CTCCGGCACA ATGGGAGGAG CTTGTGGTTA CGGTAACCTA TACAGCCAAG GCTATGGTAC CAACACGGCA GCATTGAGCA CGGCGCTGTT TAACAATGGT ATGAGTTGTG GAGCCTGCTT TGAGCTAAAA TGCGCCAACG ACCCTCAATG GTGCCACTCA GGTAGTCCTT CGATCCTCAT CACCGCAACC AATTTCTGCC CACCAAACTT GGCTCAGCCT AGCGACAACG GAGGATGGTG TAACCCGCCT CGTGAACATT TCGATCTAGC CATGCCTGTC TTCCTCAAGA TCGCTCAATA TCGTGCGGGC ATTGTCCCCG TCTCATACCG CAGAGTGCCT TGTAGAAAGA GAGGAGGGAT AAGGTTCACA ATCAACGGTC ACCGTTACTT CAACTTGGTT CTGATCACTA ACGTGGCTGG AGCAGGAGAC ATCGTGAGGG CTAGTGTGAA AGGTTCACGG ACTGGTTGGA TGAGTTTGAG CAGGAACTGG GGACAAAACT GGCAATCTAA TGCTGTTTTG GTTGGTCAGT CACTTTCTTT CCGTGTCACA GGCAGTGACC GTAGAACATC TACTTCCTGG AACATGGTTC CTTCTAACTG GCAGTTTGGT CAAACCTTTG TCGGGAAGAA TTTCAGGGTT TAAGGCGAGT TTCGAGAAGC AAAAATTTGG AGGAAATCGA AAATTTAAAG TGGTTCGAGA CAAAAGAAAA CTCTCCGCTA ATTTCGCTAT TCCTCCTTTT TTTTCTAAAT TTTACATATG GGAAGGAGAG AAAAATCAGG GGAAAGTATC TTTGACTTTT GTGTGTGTTT TCACTTTTTT TTTTAATGTT CTTTTTTTTG GGTTTGGTGT TGTAATTGTG AGTGATAGAG AAAGAGAAAG TGAGTAGCTG AAGTGGCTGT GAGAAAATTT TGTAACAGCC CGCAGCTATT AAAGTATTTT ACATGTTTGG TTGTAAGTTA CAACTTGTAA CGTTTAATCT CGTGTAATCT AAAACATGGT TGTGTTATTG ATACTTAATA 
Length1280
Protein Sequence
Protein Residue
Map Locationscaffold_4: 18263971.. 18265700
Download Sequence
A.thaliana
AGI-codeAT2G39700.1
Descriptionexpansin A4
TAIR curator summaryputative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Alias[ATEXP4][ATEXPA4][ATHEXP ALPHA 1.6][EXPA4][expansin A4]
Gene coexpression
MR
MR Locus Description
1.41421 Ahg473059
15.9687 Ahg480012 endoplasmic reticulum retention defective 2B
18.2209 Ahg919052
24.1247 Ahg938515
24.2074 Ahg924488 glycosyl hydrolase 9C2
25.4558 Ahg474578 Disease resistance-responsive (dirigent-like protein) family protein
29.0861 Ahg496451 tubulin beta chain 2
30.0832 Ahg919156 Pectin lyase-like superfamily protein
37.7359 Ahg495659 FASCICLIN-like arabinogalactan 1
40.3485 Ahg491950 expansin B3
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression