Detail



ID : Ahg483787

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|483787|fgenesh2_kg.4__2847__AT2G46340.1
Sequence
TAGAGAAAGA GAGATTCATA TTATCATCAA TATATGACAA ATTTATAGCC TCACCTTTCT TCTTCTTCTT TTTGAATTTG CTTTCTTCAA GAGGTTTCTT CTTCTTGGAA CCGTTTGGAT TCACCGCTTC GGTTTATGAT CTGATTGTGA TGAGATTCGA TTTGTTTTTT GTATAAGGTA TGGAGGCTGT AGATTGTTAT CATTCCATGT GGCAATGAAT GTGGATGCCT GCTATGGAAA GAGTAGCTGA AGAAACTGTG GCGAGTAACA ACAACATACA ATTGAAAGGA CGAGTGGATG ATGTTCCTTG TACGCTTGAT GCTCTTCATA GTAATATGGT GATTGAATCA GAAACTAGAA ACAGTGACTG TCCTGGAAGC TCAGCTCACA GGAATCTTGA GATGACTAAG CCGCCGCCTC CGGAGGAATC TGCTGGAGCT AAGCTTTCTG TTGAAGAGTT GACATTGGGG AACTATAGGA TTGTTCAAGG GACTACTACT ACTAATATGG ATAGTTCTAG GGCTGGGAAG TTTGAGCATC TTTATCGTCT TGCTAGAGGG TCTTCTCTAA GGGCAGGAGA TGGGGATCTT GATTCTCAAC CTCGTGACAT GGATCAAATG TTGTCAAGAA TTAGACAACA GCTTGCTGGA GCTCCTTCCG AAAGGCAAAA CCTGAAACCT TTTATGACTA GGAGGAGCGA TCAGAATCTT GAATCTTTTT CTGAACGTCT AAGAGCAGCT GGTGAGAACA GTATTATGAA AGCTCCTGCA TTGATCAGTA GTGAAGGTGT CCAATTGAAC ACGCCTGTCA ATTTTTCTCA GTTGTTACTT AAAAGAGCTA TGAAGGGGAA AGGGGTAGTA GGAAAGAACC AGGAGTCTCC TCCTGAATTT GTCTCTGACC AAGATTTAGG AAGCAAGGAA AAAAAGTTGG ATAGTAGCAA GTCGCCTACT CCTCACCATG TGTTACCCCT AAAATCAAGT CCCAAAGGAA ATGGGATGGT ATCACATGGT GATGGGAATC ATACTAAATC TTCTTATGGA ATCAGTTTGA GGGAGTTTCT TAGATCAAGT TATGTTAAAC GAGAGAAAAG ACATGGCCTT TGTCTATTTA GGCAGCTGGT GGAGCTGGTT GACTCAGCCC ATTCAAAAGG ATTATTCTTG CTAGACTTGA GACCATCCCT TTTCACTTTA GTTCCATCGA AGAAACTTAG ATATATTGGT ACTTTTGGAA AGAACGATCT AGACTCAGAT GTTGACGAAG ATTTGAATAG GAGGAGGCCT GTTGTTCAGG AATCATCTAT TGGAGGTAGG GATTCAAAGA AAAGAAAAAT GGACTTGCAT GTGCATTCTC CAGGGAGTCA ACTTCAGGCC ACTTCAACCA GGAGACCTTT CAAAAGGAAA AGCCCTGTGA TTGATTTAAA TGTGGTTGAT GCACGTAATC CAGACAGTTG CGAGCTTCAA CAGCAAGACT ATATCAAAAA TTTAAGTGTG TCTTCAATGA CGAGAAAACA GTCTATGTCC ACATGGCTAG AAGAGCAATG GTATACTTGT CCAGAGGAGA TTAATGGAGA AGATATCGGA GATAAATCAA ATATATATGC CCTTGGTGTT CTTCTGTTTG AGTTGCTATG CCATTGCGAG TCCGGTGAAA TGCATGCTGC AATGATGGCA GATTTACGCC ATCGGATTCT CCCACCAACA TTTCTCTCAA AATACCCGAA GGAAGCTGGA TTTTGTCTTT GGCTTCTACA TCCTGAACCC TCGTCCCGAC CAACAGCTAG AGATATACTG AAGTCAGAGT TGATATGCGA GGATGATTCA GTTAAATCGA CTGCTGCTGC TGAGGAGATA TCTGAGCTCT TACTTCATTT TTTGTCTTCT CTAGAAGTGC AGAAGCAGAA AAAAGCATCT AAGCTTTTGC AAGACATCCA GACCTTAGAG GATGATATCA AGGAGGCCGA GCGAAGATAT TCTTCAAATG TATCTCTGGT GAGATCTCAT GGAGCTATTG AAAGAAGGGT GCAATCATCT CCCCTAGACG AGCACTGTAC AACTTCTGGC GTCTTGCTTG TACCAAGTGC TAATACAGAC AGGCTGATGA GTAATATCCG TCAACTTGAA GATGCATATT TCTTCATGCG ATCACAAATC AACTTGTCGA GTTCTGCTGC TAGTACCCGT TCTGAAAAAA TTGTACTAAA GGACAGGGAC AGATGCTCTG AAAACCAAAA TGAAAATCAG TTTATGAGTA CCAAAGGAAA ATCTTCAGAT CAACTGGAAG TGTTTTTCGA GGGGTTGTGC AAATTTGCTC GGTATAGCAA GTTCGAAACC TGTGGGACAA TAAGAAGTGG GGACCTTTTA AACTCTGCAA GTGTGGTCTG CTCATTGAGT TTTGACCCTG ATGAGGAACA CATAGCAGCA GCTGGGATAT CAAAGAAGAT CAAGATTTTT GACTTCAATG CATTTATGAA TGAATCTGTC GGTGTTCATT ATCCACTAGT AGAGATGGTC AACAAATCTA AATTAAGCTG TGTTTGCTGG AATAGCTACA TCAAAAACTA CTTGGCCTCG ACTGACTACG ATGGTGTAGT TCAGATTTGG GATGCCGGGA CTGGACAAGG ATTTTCGCAG TACACCGAAC ACCAAAAGAG AGCATGGTCA GTTGATTTTT CTCCATCTGA CCCGACAAAA TTTGTCAGTG GAAGTGATGA CTGCACGGTG AAACTTTGGA GCATCAATGA GAAACGTTCA TTAGGCACAA TCTGGAGTCC AGCAAATGTG TGTTGCGTGC AATTCTCTTC TTATTCCAAT CACTTATTGG CATTTGGGTC AGCTGATTAC AAGGTCTATT GCTATGATCT TCGGTATGTC AAAACACCTT GGTGCACATT GGCTGGTCAT GAGAAAGCAG TGAGTTATGT TAAATTTATG GATTCAGAAA CCATTGTTTC TGCTTCCACT GATAACTCTC TCAAGCTTTG GAATCTTAAC AAGACAAATT CCTCTGGTTT ATCTCCTGGT GCTTGTTCAT TGACATATAA AGGACATACA AATCAGAAGA ATTTTGTCGG ATTGTCGGTT TTGGACGGGT ACATAGCTTG TGGTTCAGAG ACCAATGAGG TATATAGTTA CTATAAATCC TTACCGATGC CAATGACTTC ATACAAGTTT GGATCCGTCG ATCCCATTTC TGGAAACGAA TACTTTGATG ACAATGGACA GTTTGTGTCG AGCGTCTGTT GGAGGAAAAA ATCGAATATG CTTGTAGCTG CAAACTCTAC TGGAAACATG AAGCTGCTAA AACTTGTTTG ACAACTTGGC GTCTTCACTA CTACGGGCAT TGGACTCTTT GAGTCTGAAA CTAGGACAAA CCAGTTTGAC TTTGAAGAAA CGTTTTTGTC CTGGAAATTA GATCCTATAT GACCAGAACA GAAAAAAAAA TTGAAATCTT AGAGAAGTTG AAGAAGCAAA ACTGTCTGTG GTAATATTAT TTGATTCTTC TTCCTGTAAT CCTATACATA TGAGATATAA TTTGAGATAA CTTCTCAGAT TCTTCAGAAG TGATTCAGAT TTGGTCGGCA TAATGTGTAA TGATGAGAGG TATATAACTT GTACAAGTGT GTTATATCAT TAGCTCAATT ATGTAATTGT TGTTGGAGAT TCTCT 
Length3665
Protein Sequence
Protein Residue
Map Locationscaffold_4: 21332072.. 21337187
Download Sequence
A.thaliana
AGI-codeAT2G46340.1
DescriptionSPA (suppressor of phyA-105) protein family
TAIR curator summaryEncodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light.
Alias[SPA1][SUPPRESSOR OF PHYA-105 1]
Gene coexpression
MR
MR Locus Description
1.41421 Ahg944970 P450 reductase 2
4.58258 Ahg494049 solanesyl diphosphate synthase 2
9.59166 Ahg941228 PHYTOENE SYNTHASE
11.4891 Ahg472196 BEL1-like homeodomain 10
13.6382 Ahg479740 Topoisomerase II-associated protein PAT1
23.0217 Ahg488627 RING/U-box superfamily protein
27.7489 Ahg496897 zeaxanthin epoxidase (ZEP) (ABA1)
28 Ahg483796 Plant protein 1589 of unknown function
29.1204 Ahg489269 sigma factor E
29.9333 Ahg477956 Glycosyl hydrolase superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression