Detail



ID : Ahg484073

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|484073|fgenesh2_kg.5__65__AT2G01570.1
Sequence
TGAATGATGA TTGAAGTGGT AGTAGCAGTG AAAAACAAAG CAATCCCCAC CCATTTGCTC TTAAGATTCT TCCTTCTTCA CATAAGAGAA GTCGCATGTC CCTTCTTCTT CTTCTTCAAA CAAAAAAAAG CAAAACCCTA GATCAAATGA AGAGAGATCT TCATCAATTT CAAGGTCGAT TGTCCAACCA CGGGACTTCT TCTTCATCAT CATCTAAAGA TAAGATGATG ATGGTGAAAA AAGAAGAAGA CGGTGGTAAC ATGGATGATG AGCTTCTCGC TGTTTTAGGT TACAAAGTTA GGTCATCGGA GATGGCGGAG GTTGCTTTGA AACTCGAGCA ATTAGAGACG ATGATGGGTA ATGTTCAAGA AGATGGTTTA TCTCATCTCG CCACGGACAC TGTTCATTAT AATCCATCGG AGCTTTATTC TTGGCTTGAT AATATGCTCT CTGAGCTTAA TCCTCCTCCG GCTGGTTCCA ACGGTTTAGA TCCGATTCTT CCTTCGCCGG AGATTGGTGG TTTTCCGGCT TCGGATTATG ACCTCAAAGT CATTCCTGGT AACGCGATTT ATCATCAGAA TCAATTTCCG GCGATTGATT CTTCGTCTTC GTCGAATAAT CAGAGCAAGC GTTTGAAATC ATGCTCGAGT CCTGATTCAA TGGTTACATC CACCTCGACG GCGACACAGA TTGGTGGAGT CATCGGCACG ACGGTAACTA CAACGACGGC GGCTGAGTCA ACTCGTGCTG TTATCCTGGT TGACTCACAA GAGAACGGTG TTCGTTTAGT TCACGCGCTT ATGGCTTGTG CTGAAGCAAT CCAGCAGAAC AATTTGACTC TAGCGGAAGC TCTTGTGAAG CAAATCGGAT GCTTAGCTGT GTCACAAGCC GGAGCTATGA GAAAAGTCGC TACTTATTTC GCCGAAGCTC TTGCACGGCG GATCTACCGC CTCTCTCCGC CGCAGAATCA AATCGACCAT TCTCTCTCCG ATACTCTTCA GATGCACTTT TATGAGACTT GTCCTTATCT TAAATTCGCT CACTTTACGG CGAATCAAGC GATTCTTGAA GCTTTTGAAG GTAAGAAGAG AGTTCATGTC ATTGATTTTT CTATGAACCA AGGTCTTCAA TGGCCTGCGC TTATGCAAGC TCTTGCGCTT CGAGAAGGAG GTCCTCCAAC TTTCCGGTTA ACCGGAATTG GTCCGCCGGC GCCGGATAAT TCTGATCATC TTCACGACGT TGGCTGTAAA TTAGCTCAGC TTGCGGAGGT GATTCACGTT GAATTCGAAT ACCGTGGATT CGTCGCTAAC AGCTTAGCCG ATCTTGATGC GTCGATGCTT GAACTTAGAC CGAGTGAGAC GGAAGCTGTT GCGGTGAACT CTGTTTTCGA GCTCCATAAA CTCTTAGGTC GTCCCGGTGG GATAGAGAAA GTTCTCGGCG TTGTGAAACA GATTAAACCG GTGATTTTCA CGGTGGTTGA GCAAGAATCG AACCATAACG GACCGGTTTT CTTAGACCGG TTTACTGAAT CGTTACATTA CTATTCGACT CTGTTTGATT CGTTGGAAGG AGTTCCGAGT AGCCAAGACA AAGTCATGTC CGAAGTTTAC TTAGGGAAAC AGATTTGCAA TCTTGTGGCT TGTGAAGGTC CTGACCGGGT CGAGAGGCAT GAAACGCTGA GTCAATGGGG AAACCGGTTT GGTTCGTCCG GTTTTGCGCC GGCAAATCTC GGGTCTAACG CGTTTAAGCA AGCGAGTATG CTTTTGTCAG TGTATAATAG TGGCCAAGGT TATCGTGTGG AGGAGAATAA TGGATGTTTG ATGTTGGGTT GGCACACTCG CCCGCTCATT ACCACCTCCG CTTGGAAACT CTCGACGGCG GCGCACTGAG TTTGACTCGA GTGAATTTGA GATTGAAATC AGTGGACCGG TGATGACATA TGTTCGGACC CAGACCAAAA CCGAACTGAA TCGAACCGGT TTGCCTTTTG TTTATTTTAT TTATTTTCAC CTGTTTAAAA TTCTTATATT TGAAATATCG TTTTCGTAGG TCATTTTTAA ATTTATGCCT TTTTTGGGAT CAATTTAAAA TAGGCTGAGA ATGTATTTAT TAAAAAACTA TGTTTTAATC TCA 
Length2133
Protein Sequence
Protein Residue
Map Locationscaffold_5: 296540.. 302802
Download Sequence
A.thaliana
AGI-codeAT2G01570.1
DescriptionGRAS family transcription factor family protein
TAIR curator summaryMember of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
Alias[RGA][RGA1][REPRESSOR OF GA][REPRESSOR OF GA1-3 1]
Gene coexpression
MR
MR Locus Description
4.58258 Ahg927082 Duplicated homeodomain-like superfamily protein
9.53939 Ahg494914
10.7703 Ahg325951 Potassium transporter family protein
12 Ahg343993 alpha/beta-Hydrolases superfamily protein
13.6015 Ahg926404 Phosphoglucomutase/phosphomannomutase family protein
21.3307 Ahg495675 oligopeptide transporter 1
24.4949 Ahg476506 protein tyrosine kinase family protein
25.4165 Ahg924694 ACC synthase 10
32.1248 Ahg329483 Pentatricopeptide repeat (PPR) superfamily protein
33.7639 Ahg917379
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression