| Annotation |
|---|
| Description | jgi|Araly1|489269|fgenesh2_kg.6__2403__AT5G24120.1 |
| Sequence |
CACAAGTGAG CTAGCTTTTC GAAAGATTCA ATTTTTCAGC CTTAGATTGT GATGGGAGTT GTGTTTATTT CAAGTTCAGC TGCAAGATCT CCGCTTGGGT TAAGCAGCGA TCTTTTGACA CATCGGTCTT CGCTTAAGAA GCCATCCATT GTTGCGTTTA AAGCCGATGA TTCGAGCAAT TCAGCTATGA TCATTCCTCC TCGAGAACAA GTTTTGATTC CTGCCGAAAA GCATAATGAG AAGAAGAGAG TAGTAACGAG GAGGAAGCCG TGTAAAACTC CGAAAAAACC GAGTTCTTTG GAACACAATT CGGCTCCTTC GTGTTCATTA GGAGTTGATT ACTATGAAGC TGCTGCTAGA CTTGAAAGCA TATACAAGCT TAGTCCTGCA ACAACCACAT TAGTCGAAGA GGATGTTGAA GATGGCGGTT CCAAAACGAA AGTTTCACCG AGGAGAAAAA GGAAACAGAG TGGTGAGGAG AAGAAAGTTG TTGTGAGGAA TAATGTGAAG AAGGAAAAGC GTTTGAGTCT TGATAAACGG ATCGCTTTGA AGAGAAACGT TCAGGACAAA CCAGTTGTTG TTTCTGCTGA GAAGAAAGTA ACAAAGAGGC AGCAAGAAGA GGAGAAGATC GAGAGGCTTG TGCGGGACTA TTCAGCTTCT AATGATATTG TGAGCTTGGA CTGGAAAAAA ATGAAGATAC CTCCTGTTCT TTCTTCCACT GAACATGCTT GGTTGTTTAA GTTGATGCAA CCTATGAAGG CTCTTCTTGA AGTAAAAGAT GAATTGCATA AGAGCTTGGG AAGAGAGCCT AGGGAAGCTG AAATAGCCGA GGAGATCAAT ATGACCGCAG GTGAAGTAAA AAAGAAGATC GAAATAGGTA GAGCTGCAAG AAACAAACTT ATTAAGCACA ATCTCCGGCT TGTCTTGTTT GTTATGAACA AATATTTTCA TGATTTTACC AACGGACCGA AATTCCAAGA CCTTTGTCAA GCGGGTATGA GAGGGCTTAT CACAGCAATT GACCGCTTTG AGCCAAAAAG GAAGTTCCGT CTTTCGACTT ATGGTTTGTT TTGGATTAGA CATGCCATCA TAAGGTCAAT GACAACTTCA AATTTCACTC GTGTCCCATT TGGACTTGAA TCGGTTAGAG TGGAGATTTT CAAAACAAAG ACTGAGCTAT TGTTTGAGCT GGGAAGACTT CCAACCGAGG ACGAGGTAGT TGAGAGACTC AAGATAACAC CTGAGAGATA CCGTGAAGTA TTGAGGGCTG CAAAACCCGT TTTGTCACTA AATTCAAAAC ATTCGGTTAC TCAAGAAGAA TTCATCAACG GAATCACAGA TGTTGATGGT GTTGGAGCTA ATAACAGCAG ACAGCCTGCT CTTCTCAGGC TCGCTCTCGA CGACGTGCTC GATTCATTGA AGCCGAAAGA GAGTCTGGTT ATTCGACAGA GATACGGTCT TGATGGGAAA GGCGACAGGA CTCTAGGAGA GATAGCTGGA AATCTCAACA TCTCTAGAGA AATGGTTAGG AAACATGAAG TCAAGGCCTT GATGAAGCTT AAGCATCAGG CTCGAGTTGA TTACCTTCGT CAATACATCG TCTGAAACCA AACCGAGCCG AATTGAGCGC CTCACTCAAG CATTTGTGCA TACTTGGTAT GATTTCTTGA ATTTACGAGA TACTTCAAAC CCTCTTATAA CCGTTGTATA GTTGTGTATG TAAGTAATAT CAGAGTTACT TATAGCTGCG TTAAATCGAG CAGTGAATCA AAATCGTTGT ATTATATCAT TACTATACAG TCTATACTCA TACTGAAAAG TTATACATGT AAAGTTTGAG ACATTGTATG CATTATTTTC |
| Length | 1860 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 9853346.. 9855666 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G24120.1 |
| Description | sigma factor E |
| TAIR curator summary | Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. |
| Alias | [ATSIG5][SIG5][SIGE][SIGMA FACTOR 5][sigma factor E] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg493645 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 2.44949 |
Ahg904747 | Protein of unknown function (DUF760) |
| 4.89898 |
Ahg488004 | alpha/beta-Hydrolases superfamily protein |
| 5.19615 |
Ahg479910 | Protein kinase superfamily protein |
| 6.9282 |
Ahg939472 | RING/U-box superfamily protein |
| 6.9282 |
Ahg492115 | mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase |
| 7.74597 |
Ahg918938 | Late embryogenesis abundant 3 (LEA3) family protein |
| 7.93725 |
Ahg477094 | evolutionarily conserved C-terminal region 8 |
| 8.06226 |
Ahg943195 | fibrillin |
| 8.12404 |
Ahg938584 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|