Detail


ID : Ahg491580

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|491580|fgenesh2_kg.7__1013__AT4G31590.1
Sequence
AAAATGGGTC TCTAGATTTC AGATTTCTGG GATCTGGATG TTTGATTAGT CTCTTCCATT ATTAGTAAGA AAGGTCACTC CTTTCACTCA AAGTTACTAC CTTTTTGTTT TCCTGAAAAT GGGTTTTGTT TAAAATCTCC CACTTTGAGA TTTGGGGATC CTTACCACAT TTAGAGATTT CAACTAGGTT TTTCTATTTC TCTACTTGTC AGAGGCTAAA GATGGCTCCA AGGTTGGATT TTTCAGATTG GTGGGCGAAG GACACGAGGA AAGGAACACC AGTTGTGGTG AAAATGGAGA ATCCTAATTA CTCTGTAGTT GAAATCGACG GTCCAGATTC AGCTTTTAGA CCAGTGGAGA AGAGCAGAGG CAAGAACGCT AAGCAAGTCA CTTGGGTTTT GCTTCTCAAA GCTCATAGAG CTGTTGGGTG TCTCACTTGG CTCGCCACTG TCTTTTGGTC TCTCCTTGGT GCCATCAAGA AACGGCTTAG TTTCACTCAC CCACTTGGCT CTGAGAAATT AGGCAGAGAC AGATGGCTTT TCACTGCCAT TAAGCTCTTC TTAGCTGTTT CCTTACTGAT TCTCGGGTTT GAGATTGTTG CTTATTTTAG AGGATGGCAT TACTTTCAAA GTCCTAACCT TCACATCCCC ACTAGCACAC TTGAGATCCA GAGCCTGCTT CATCTTGTGT ATGTTGGTTG GTTAACCCTT AGAGCTGATT ATATTGCTCC TCCTATCAAA GCTCTCTCCA CGTTTTGTAT TGTGCTGTTC CTTATACAGT CCGTAGATCG TTTGATACTT TGCTTGGGAT GTTTTTGGAT CAAGTATAAG AAAATTAAGC CGAGATTTGA TGAGGAACCT TTCCGTAATG ATGATGCTGA GGGATCTGGA TTTGAGTATC CAATGGTTCT TGTTCAGATT CCAATGTGCA ATGAGAGAGA GGTGTATGAA CAATCTATAT CTGCTGTGTG TCAACTTGAC TGGCCGAAAG ATCGAATACT GGTTCAGGTT CTCGATGATT CGAACGATGA AAGCATCCAA CAATTAATTA AAGCTGAGGT TGCCAAATGG AGCCAAAAGG GAGTCAACAT AATCTACAGG CATCGCTTGG TTAGAACTGG GTATAAAGCT GGTAACCTCA AGTCAGCAAT GAGCTGTGAT TACGTGGAAG CATACGAGTA TGTTGCAATA TTTGATGCCG ATTTCCAACC TACTCCGGAT TTCCTTAAAC TAACAATTCC ACATTTCAAG GATAACCCAG AGTTGGGTCT AGTTCAAGCT AGATGGACAT TTGTGAACAA AGACGAGAAC TTGTTGACCC GTCTTCAGAA CATCAATCTG TGTTTTCACT TTGAGGTGGA GCAGCAAGTG AACGGCGTGT TCTTGAACTT CTTTGGTTTC AATGGAACAG CTGGAGTTTG GAGAATTAAA GCCCTCGAGG AATCTGGTGG TTGGCTTGAA AGGACCACTG TGGAGGATAT GGACATAGCA GTCCGCGCTC ATCTTCATGG ATGGAAGTTC ATATATCTTA ATGATGTCAA GGTCCTTTGC GAAGTTCCTG AGTCCTACGA AGCATATAAG AAGCAGCAAC ACCGTTGGCA TTCGGGACCT ATGCAGCTTT TCCGCTTGTG TCTTGGTTCA ATCTTGACCT CTAAGATAGC CATATGGAAG AAGGCGAATC TGATACTTCT ATTCTTTCTT CTTAGGAAAC TCATACTTCC TTTCTACTCC TTCACGTTGT TCTGCATAAT CCTTCCACTC ACCATGTTTG TTCCAGAAGC TGAGCTCCCT GTTTGGGTCA TCTGCTACAT ACCGGTTTTC ATGTCTTTCC TCAACCTTCT TCCATCTCCA AAATCGTTTC CTTTCATTGT TCCTTATCTC TTGTTCGAGA ACACAATGTC TGTCACCAAG TTCAACGCGA TGGTGTCCGG ATTATTCCAA TTGGGTAGCT CTTACGAGTG GATTGTCACA AAGAAAGCTG GAAGATCATC CGAGTCAGAT CTTTTATCTA TCACCGAGAA AGAGATACCA AACAAGAAAA GTCAATTGCT TAGGGGAGTT TCCGACAGCG AGCTTTTGGA GCTGAGCCAA CTTGAAGAAC AGAAACATGC GGTTTCAAAG AAACCCGTCA AGAAAACCAA CAAGATATAC CACAAAGAGC TCGCATTGGC CTTTCTTTTG CTCACTGCAG CGCTTAGGAG TCTCTTGGCA GCTCAAGGAG TGCATTTCTA CTTCCTGTTA TTCCAAGGTG TCACCTTTCT TCTTGTGGGT CTCGATCTCA TAGGCGAGCA GATGAGCTGA GAAAAACAGA AAGAAGCTTC ATAACTTGGG TCAATAAATC AGTGAGTCTG ATTCCCCACT TCCTCTATGT TCAGTGGTAT CCTCTGTAAT GAGATTGTTG GAACCATAGT GGTAGCATTA ATTGATTTTC CGTTTTGTTT GTTTGTTATG TTTGTTTGAT TCCTCCATTG TTAGGGATAG AGTGTGTGAG CCAGAGATTC ATACATGTAT ACAATATCTG TAAAGTTGGA ACATGTTGTT GGCAGTTAAA AGAGCCTCTG TCTTGGAACA AATTCAAGAA CCATGTCAAA TCAACTGCGG AGAATTTAAA GCCCAACCTT TGTGGAAAGA GATTGTAACT GTACATAACT GACATGAACT AGTTTTCTGA CT
Length2672
Protein Sequence
Protein Residue
Map Locationscaffold_7: 4008464.. 4011510
Download Sequence
A.thaliana
AGI-codeAT4G31590.1
DescriptionCellulose-synthase-like C5
TAIR curator summaryencodes a gene similar to cellulose synthase
Alias[ATCSLC05][ATCSLC5][CSLC05][CSLC5][CELLULOSE-SYNTHASE LIKE C5][Cellulose-synthase-like C5]
Gene coexpression
MR
MR Locus Description
11.3137 Ahg485285 IQ-domain 21
13.7477 Ahg951496 CYCLIN D3;2
18.1659 Ahg480193 O-Glycosyl hydrolases family 17 protein
20.8087 Ahg481161 serine carboxypeptidase-like 11
21.5639 Ahg485020 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
22.0907 Ahg481491 Leucine-rich receptor-like protein kinase family protein
22.9783 Ahg473518 RNA-binding (RRM/RBD/RNP motifs) family protein
24.9199 Ahg477494 Mannose-6-phosphate isomerase, type I
25.0998 Ahg483684 FASCICLIN-like arabinogalactan protein 8
30.8221 Ahg926520 Peroxidase superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression