| Annotation |
|---|
| Description | jgi|Araly1|493202|fgenesh2_kg.7__2635__AT4G16740.1 |
| Sequence |
TAAAATATTA TAGCGGAGTC TAAAGAAGAG TTCATCCAAT TATTTAACTC TTTAGTGTTA TCATTAGCAA AGCAAAGAAA TGCCTAAACG ACATGTTCAA CCGCGTTTCA CTGGCAAGGC TGAGTCGAAG ACACCATCCC AGCCTCTTGT AGCCCGTCGC TCTGCAAACT ATCAACCGTC TCTTTGGGAG CACGAGTATC TCCTCTCGCT CGGTAATACA GATGTGAAAG AGGCCGACAA CATCGAGAGA GTTATGTTAT TGAAGCAGGA AGTGAGTAAA ATGCTCAATG AAACGGAGGG TTTACTCGAA CAGCTAGAGC TCGTCGACAC TTTACAGAGG CTTGGAGTTT CTTACCATTT TGAACGTGAA ATCAAGAAGA CTCTAACGAA TGTGCATGTA AAAAATGTGA GAGCACACAA AAAACGGATA GATCGCTGGG AAGACTTATA CGCGACCGCC CTTGAGTTCC GACTCCTACG GCAACATGGT TTCAGTATCG CAGAAGATGT TTTAGACGGA AATATTGGAG ATGATTTGGA TGATAAAGAC ATCAAGGGTA TTCTTTCACT ATACGAAGCT TCATATCTCT CGACCAGAAT CGATACTAAA TTGAAAGAGA GCATATGCTA TACAACAAAA CGACTTAGAA AATTTGTGGA GGTTAATAAG ACTGAGAACA AATATTACAC TCTTCGAAGG ATGGTGATCC ATGCCTTAGA GATGCCGTAC CACCGGAGAG TGGGAAGATT AGAAGCAAGG TGGTACATAG ACGTGTACGG AGAGAGACAC GACTTGAACA CTATCTTGCT TGAATTCGCG AAACTTGATT TCAATTTCGT ACAAGCTATC CATCAAGACG AGCTCAAATC TCTCTCTAGT TGGTGGAGCA AGACGGGATT AACAAAACAC CTCGATTTCG TTAGAGATCG AATAACGGAG AGTTATTTCT CGAGTGTTGG AGTAATCTAT GAGCCGGAGT TTGCATATCA CCGACAAATG CTTACAAAAG TTTTCATGCT TATAACAACT ATCGACGATA TATACGATAT TTATGGGACA TTGGAGGAGC TTCAACTATT CACAACCATA GTTGAAAAAT GGGATGTGAA TCGTCTTGAA GAACTTCCCA AGTACATGAA GTTATGTTTT CTCTGCCTCG TCAACGAAAT CAATCAGATT GGATATTTTG TTCTCAGAGA TAAAGGGTTT AATGTGATTC CTTACCTCAA AAAAATCCCA ATGAATTATC TACCGAATAG TCTTTTGTTA AGTTTCAAAT GGGCAGATAT GTGTACAACG TTTTTGAAAG AGGCAATGTG GTACAAAAGT GGTTACAAAC CTAACTTCGA AGAATACATG CATAATGGTT GGATCTCAAG TTCAGTCCCT ACAATACTTC TACACTTGTT CTGTCTCTTC TCCGACCAAG CCTTAGACAT TCTTGTCTCC TACAATCACT CTGTAGTTCG AAGCTCCGCC ACCATCCTCC GTCTCGCTAA CGATCTCGCC ACTTCTTCGG TCAGTCATGG AGGAATTAGC GAGAGGCGAC ACTATGAAAT CCGTACAATG CAGAGTCACG CGCGTATAGA CATTCAAGGA ACGATTGGTG TCGCTTGGGA TGACTTAAAC TTGGAGAAAT GGAGTTGTAA GTTGCATCAA AGTTTCGTAG AAGCTGCGGT TAATCTTGGA CGTGTGGCTC AATGTGTTTA TCAGTACGGT GATGGCCATG GCTGTCCTGA CAAGGCTAAG ACCGTCAATC ATGTCCGGTC CTTGCTCGTC CACCCTGTTC CACTCAATTA A |
| Length | 1801 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 11081858.. 11085118 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G16740.1 |
| Description | terpene synthase 03 |
| TAIR curator summary | Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect Plutella xylostella. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity. |
| Alias | [ATTPS03][TPS03][terpene synthase 03] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg338258 | terpene synthase 04 |
| 1.41421 |
Ahg928863 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| 5.65685 |
Ahg901023 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| 5.91608 |
Ahg926733 | |
| 7.48331 |
Ahg920831 | isochorismate synthase 2 |
| 7.74597 |
Ahg474258 | ABC-2 type transporter family protein |
| 8.66025 |
Ahg488622 | HXXXD-type acyl-transferase family protein |
| 9.16515 |
Ahg485382 | HXXXD-type acyl-transferase family protein |
| 9.8995 |
Ahg921335 | Protein of unknown function (DUF300) |
| 10.3923 |
Ahg316461 | NmrA-like negative transcriptional regulator family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
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