| Annotation |
|---|
| Description | jgi|Araly1|493674|fgenesh2_kg.7__3107__AT1G14790.1 |
| Sequence |
AAGATGGGGA AGACAATTCA AGTGTTTGGA TTCCCGAATG GTGTGAGCGC AGAGGAAGTT AAGAAATTTC TTGAAAGACT CACTGGTTCA GGCACTGTTT ACGCAATCAA AGTTAGACAA CCAAAGAAAG GTGGTCCAAG AGTCTTTGCC ATTGTTCAAT TCACATATGA GAGACATGCG AGGCAGATCA TCACGGGTGC CGCAGAACGT AGTCTTTATT ATGGGAGATC TTATCTCAAT GCTTTTGAAG TGGAACAAGA CATTGTTCCA AAGCCAAGAG CTTCATTGCA CAACATCTCT GGTTTAAAGA TGTATTTTGG ATGTCAAGTC TCAACTAAGA AGTTTTTAAC TCTCTGGAGT GCTCAAGATG TTTGTGTCTC GTTTGGAATT GGGATGAGAA AACTGCATTT TTCGTTTTCT TGGTATCAAA AGGACTATCG TCTTGAGCTT TCGTATGAGA ATATATGGCA GATCGATTTG CATTCTCCGC AAGGACGGTC GTCGAAGTTT CTTGTGATTC AGAAAAAAAA ACCTATCAAT CTTTTGTTTG GAATGATGGA TTTTTACAGT GATGGGTCTG ATGAGCAATG GATTAGAACT ACAGATTTCA CTTCATCTTC TTGTATCGGT CAATCAACAG CCTTCTGTTT AGAGCTTCCT GTTCATCTTA ATGTTCCTGA TTTCAGAGAG AATTTTGCCA ACTATGCAGA GCACAGAGCC AGCCCTTTTC TCATTGAATC CGGTTCTAGC TATTCATCTA ATGCGAACAA GCTCGTTCCG GTTGTTGATC CTCCTCCAGG GTTTGATTTG CCTTTTGAGA TCTTGTTTAA ACTTAATACA TTGGTGCAGA ACGCATGTCT CCCAGGGCCA GCTCTTGATC TTGATGTTTA TCAGTTGCTT AATCCCAAAA AAATTGACAG AGCTCTCATA GATCACTGTC TTGAGAAACT CTTTTACCTT GGGGAATCTT GCTATGAGCC TGCTCGTTGG CTTCGCAAAC AGTACAAGGA GTTGAGCTCG AAAGGAAAGC TTCCACTGTC TCCTACGATA TCTCTTGATG ATGGACTTGT TTATATGTAT CGCGTTCAAG TTACACCAGC AAGAGTCTAT TTCTCTGGAC CAGAGGTGAA TGTTTCGAAT CGTGTGCTTC GACATTACTC CAAGTATATC AACAACTTCC TCAGGGTATC ATTTGTTGAT GAAGATCTTG AAAAAGTTCG TTCCATGGAT CTGTCTCCAC GCTCTTCTAC TCAAAGAAGA ACCAAGTTAT ACGACAGGAT ATACTCTGTT CTTCGCGATG GGATTGTCAT CGGCGATAAG AAGTTTGAGT TTCTCGCTTT TTCTTCCAGC CAGTTGCGGG AGAACTCTGC TTGGATGTTT GCACCGATAG ACGGGCTAAC ATCAGCACAT ATCAGAGCTT GGATGGGTGA TTTTGACCAT ATAAGAAATG TAGCAAAATA TGCTGCAAGG CTTGGTCAAT CTTTTAGCTC GTCAAGAGAG ACACTCAATG TTAGGAGTGA TGAGATCGAA GTGATTCCTG ATGTTGAGAT TATATCTTTA GGGACACGCT ATGTGTTTTC TGATGGAATA GGAAAGATCT CAGCTGAATT TGCTAGACGG GTGGCTAAGA AATGTGGCCT CACAGAGTTT TCTCCATCTG CTTTTCAAAT CCGTTATGGC GGTTATAAAG GAGTGGTGGC TGTTGATCCA AACTCATCAA AGAAACTGTC TCTGAGGAAG AGTATGAGCA AATTCGAGTC GGAGAACACG AAGCTTGATG TTTTGGCATG GAGCAAGTAC CAACCTTGTT ATATGAACAG ACAACTGATT ACACTTTTGT CTACTCTCGG GATTAAAGAC AGTGTATTTG AGAAGAAACA AAGGGAAGTT GTGGATCGGC TCGACGCAAT CTTAACTGAT CCTTTGGAGG CTCACGAGGC TCTTGGTTTA ATGGCTCCAG GGGAGAACAC AAATATTCTC AAGGCATTGA TCTTGTGTGG CTATAAACCT GACGCCGAAC CTTTCCTTTC AATGATGCTT CAGAATTTCA GGGCATCTAA GTTGTTAGAA CTACGGACAA AAACAAGGAT TTTCATTTCT GGTGGAAGAT CTATGATGGG ATGCCTAGAT GAGACCAGAA CATTGGAGTA CGGTCAGGTA GTAGTGCAGT ATTCAGATCC CATGAGGCCG GGAAGGCGAT TCATCATCAC CGGACCTGTT GTTGTTGCGA AAAACCCTTG CTTGCATCCT GGTGACGTGC GTGTTCTTGA AGCTGTCAAT GTCCCAGCTT TGAATCACAT GGTGGACTGC GTTGTATTCC CGCAAAAGGG ATTGAGGCCA CACCCAAACG AATGTTCTGG GAGTGATTTA GATGGAGATA TATACTTTGT ATGTTGGGAT CAAGAATTGA TTCCACCAAG AACGTCTGAA CCAATGGACT ACACTCCTGA ACCAGCTCAA ATCTTGGATC ATGATGTCAC TATTGAGGAA GTTGAAGAGT ACTTCGCAAA CTACATTGTG AATGATAGTT TAGGTATCAT CGCAAATGCT CATACCGCCT TTGCGGATAA GGAACCACTC AAGGCGTTTA GTGACCCATG CATTGAGCTT GCAAGGAAGT TTTCAGTTGC GGTAGATTTC CCAAAAACTG GTGTTGCCGC TGAGATACCG CAACATCTTC ACGTGAAAGA GTATCCTGAT TTCATGGAGA AACCGGATAA GCCAACATAT GAGTCGAAGA ACGTGATCGG TAAGCTTTTT AGAGAGGTAA AAGAGCGAGC TCCACCGTTG ATCTCGATCA AATCATTCAC TCTTGATGTG GCCTTAAAGT CTTATGATAA AGACATGGAA GTTGACGGAT TTGAGGAGTA TGTTGATGAA GCTTTCCACT ACAAGGCGAA TTATGATTTC AAGTTAGGTA ATTTAATGGA TTACTATGGG ATTAAGACTG AGGCTGAGAT ACTTAGTGGT GGTATCATGA GGATGTCAAA GTCATTCACC AAGAGACGAG ATGCAGAGTC GATTGGAAGA GCGGTTCGGG CGTTGAGGAA AGAAACTTTG TCGTTGTTCA ATGCCACTGA AGAAGAAAAT GAGTCAGCAA AGGCTTCGGC TTGGTATCAT GTAACGTACC ACTCAAGTTA CTGGGGACTT TATAATGAGG GTTTGAATCG TGACCATTTC TTAAGCTTTG CGTGGTGCGT TTATGATAAG CTTGTGAGGA TCAAGAAGAC CAATGCTGGG AGGCGTCAGA GGCAGGAGAC GCTCGAGCGG TTAGGCCATG TTCTGCGTTT GAGTTGATTT TTTATTTTTA CATAAATGTT TGGTTTTAAG TGAAATCAGA AGTTTCTACT TTCTATGTAA TTCAATTCGC CGTTTGACCG AAGTAACGCT AAAATTCATT CTGTTTACTC AGACTACAAT TTTTGTACAA AAATCTCTAA ATTAATTAGT ACCAAACAAA AAAATTCTAT TTTCAACCTC TCAACATATG T |
| Length | 3491 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 18474629.. 18478388 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G14790.1 |
| Description | RNA-dependent RNA polymerase 1 |
| TAIR curator summary | Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. |
| Alias | [AtRDR1][ATRDRP1][RDR1][RNA-dependent RNA polymerase 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 13.0384 |
Ahg931897 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
| 15.9687 |
Ahg930202 | pathogen and circadian controlled 1 |
| 23.1084 |
Ahg473540 | Protein of unknown function (DUF567) |
| 32.0312 |
Ahg938912 | pectin methylesterase 61 |
| 35.4965 |
Ahg492536 | plasma membrane intrinsic protein 1;5 |
| 42.4264 |
Ahg486377 | |
| 43.7493 |
Ahg496527 | Leucine-rich repeat protein kinase family protein |
| 48.9592 |
Ahg485260 | U-box domain-containing protein kinase family protein |
| 51.4976 |
Ahg480590 | NAC domain containing protein 36 |
| 53.9815 |
Ahg486937 | DNAJ heat shock family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|