| Annotation |
|---|
| Description | jgi|Araly1|493697|fgenesh2_kg.7__3130__AT5G37055.1 |
| Sequence |
AAATCCGCCG CTGCGCTTCC AACGTCGCCG GCTATCTAAA CATTTTCCGG GATGGAGGAA GAGATGTCGA ACCGTCGAGT ATCAAATCGG ACTCGCAAGG TCGCTACGAA GATGGCGGCG GCTCTTACAA GCAATGATAA TCGAACACAG GCTGCTATAG CTAGGCTGGA GGCTTTAGAG AATGATAATG GTGCTGTTGA AGTGGTAGAT ATGAACGATG ATGACGAAGC TTCTCTTGAT GAAGACGATG ATCTTGGTTA CGTACAGAAG AAGCAACACA AAGGATCAAA GCGTAAAACT CGACAAGCGA AAGCTTTAGA AGCTCGTAGA GCTCCTAAAT CATTCCTTGA GCTGTTGCAA GAGGCAAATT TGGAATCTTT ACCTGCGCAT GTACCGACTT ACTTGAAAGC AGCTGTTGGA CCTCCGAGTT CGTCTTCTCG TCGCCATTTC TGCTCGGTTT GTGGTTACAT TGCAGGCTAC AATTGTTGTT TATGTGGGAT GAGGTTTTGT TCTATTCGTT GTCAAAACAT TCACAAGGAT ACTCGTTGTC AGAAATTTGT TGCGTAGGAA AGAGTGAAAA CATATGTAAC ATATTTTTCT AAATGTATTT GAAACATCAA TCAATCTCCA TGTTCCTGTC |
| Length | 640 |
| Protein Sequence | |
| Protein Residue | |
| A.thaliana |
|---|
| AGI-code | AT5G37055.1 |
| Description | HIT-type Zinc finger family protein |
| TAIR curator summary | Encodes SERRATED LEAVES AND EARLY FLOWERING (SEF), an Arabidopsis homolog of the yeast SWC6 protein, a conserved subunit of the SWR1/SRCAP complex. SEF loss-of-function mutants have a pleiotropic phenotype characterized by serrated leaves, frequent absence of inflorescence internodes, bushy aspect, and flowers with altered number and size of organs. sef plants flower earlier than wild-type plants both under inductive and non-inductive photoperiods. SEF, ARP6 and PIE1 might form a molecular complex in Arabidopsis related to the SWR1/SRCAP complex identified in other eukaryotes. |
| Alias | [ATSWC6][SEF][SERRATED LEAVES AND EARLY FLOWERING] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 7.74597 |
Ahg901573 | |
| 13.5647 |
Ahg483034 | Microsomal signal peptidase 25 kDa subunit (SPC25) |
| 17.3781 |
Ahg890991 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein |
| 38.8844 |
Ahg478124 | Ubiquitin-like superfamily protein |
| 39.8372 |
Ahg473107 | Apoptosis inhibitory protein 5 (API5) |
| 51.5946 |
Ahg940438 | Ribosomal protein L17 family protein |
| 54.2033 |
Ahg943471 | Homeodomain-like superfamily protein |
| 56.3205 |
Ahg494108 | Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein |
| 66.9029 |
Ahg923159 | chromatin remodeling factor18 |
| 68.2349 |
Ahg477752 | Pseudouridine synthase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|