| Annotation |
|---|
| Description | jgi|Araly1|494331|fgenesh2_kg.8__147__AT5G46410.2 |
| Sequence |
CTCTCTTGAC CGTTCGTGGA AGTTATGTGA GAGAAAGAAA AAACCCAGAG AGAAGAGAGA GAGACCCACA ACACAAACAC AAAGTAGACG AAGACGACGA CGACGAATCA GCTCTCTTCT CTTCTCCTCT CCTATCGCAG CATCTTCTGC TGGTTTGGTC TTTCATGCAC CTAAATGTGC TTGATCCAAG GTCGTTATAA TTCTGTATAC AGAGCCAATG CCATATATAG AAATGAAGAG CAAGATAAGC AAGGTTCTTG GTGTCTGTAA GAAACATAAA GCAACTACAA GAAATTCTTG CTCTTTGTCC AAAATATCAG GGGACTTGGA AAGCATGACA GCAGCTATTA CTCATGCTTG CGACGGCGAT GAGAAACAGC ATCCTGTTTC TTCAGGGCTG GATACTTTTA CTCGGGATAC TGAAACCAAT GAGCCTGCTG AAATGCTTGT TGACGACACT TCTCAATCTC AGGGGTTTGC ATCTTCAGTC GATGGTTCTG AATCTGTCGA AAAAATGGAA AATGCTTGCA ATTACATGTC GAACTCAGAT ACAATATTTT CACCTGTTCT GAATGATGAA CTGAATGGAA CTGATCGAGT ATTTTCAGCA GGAAACTCTG TGCACTGGGA AACCCCTAGG TGGGGAGCCG ACGAGAGCAG CAACAAGATT TGCTTTGACA ACCAAACATG CAACGTTTCT GATTTCTATA TTTCCGACGT TCTTATTGCG AGCTTGCCGT TTGATGAGAG TGGAAACAAT GATGCTTTCA CTGAAATAAG CCCCTTGCCT CATTACATCT TTCCTGAACA GTACATGGTA CTACCTTACT TAAAAGATGG ATCAGCCAAC ACAGATGATA TTAAATCAGA CGTTGACAAG ATTAATCTCG ATAACCATGA ATTGTTTCTG GCATTCAACC GGACAAGATC GCCCAATATG GAACCAGAGG ATCATGCTGA ATCTGAACTA GCTGAAGACT TTGATCCTCA GCTTTTTATA AAAAATCAGC CAGAATTGTC GGATGTTGTA TCCAATTATT GGCCTCGGGA TACCCTAAGA AAGAAGTCTG TGACCCTTGT CCTTGATTTG GATGAAACTT TGGTCCATTC GACTCTGGAA TCGTGTAATG CTGCAGATTT TTCCTTCAGA GTCTTTTTCA ACATGCAAGA AAACACGGTC TATGTGAAAC AAAGGCCACA CCTTTACAGG TTCTTGGAGA GGGTGGTAGA ATTGTTTCAT GTCGTCATCT TCACCGCAAG CCACAACATC TATGCTTCGC AACTTCTCGA TATATTGGAC CCAGAGGGAA AGTTCATATC ACAGCGTTTT TATCGTGATT CATGCATTCT TTTGGATGGA ATTTACACCA AGGATTTAAC TGTACTGGGT CTTGATCTGG CCAAAGTGGC TATAATTGAC AACTGTCCGC AGGTGTACAG ATTGCAAATA AATAATGGGA TCCCTATCAA AAGTTGGTAT GATGATCTAA CTGATGATGG TTTGATTTCT ATACTACCCT TCTTAGAGAC TTTGGCTGTT GCTGATGATG TTCGGCCTAT CATTGGCAGG AGATTTGGTA ACAAGGAATA AGAGCTTCCT TCTCTTTTTC TCTATATACA TCGAGTGCAG ATTCTGATAT CTTTCCTTTT GATTTTAGTC ATAAATTGGC CCTTAATTAG TTCCTCATAT CTCTTGTTAG GTCGTTAATT AGGTAACCAA AGAATAAGCT CGTTGAGTCT AGTGATAGTA AGTTTCCTTG CTTGCTCGCT TTTTTAATAG AAGACCTAGT TGTGGGCTTA AATCTTATGA TTTTGTTGGT TCTCCTCTGC CAAGATAGAT CCTAGAAAAT CTTGCAGTTT GTTACAAATG TACAGTTGGT TAAGCTGAGA TAATGGATGT GTACAAATGA GTTACTATTG CGTGAAATCA TTTTGGAAGT TAATACCAGC GGCGTTCATG GTCTCTCTAT TTGGATTCCT CTTCTACTGT TAGTTGAGCT TGAAATTCTT ACTTGGACTG GTAAATCCAG AACGTTTTTA CCTGCGTCTA TGCCAGTCAT ATAAATACAG AAATATAATC AAATAATGCA GAAGTTTATT GAATCTTCTA TCAGCTTCTA TTGTTTATTT TAAAGGTTCT GAGCAAAGTT ATCCCACGTT TTCCGTCTCT TGGCTTTGCA AGATTCAGAT GAGATATCAT ACTTCGAGAT ATCATCCAAA GAAGTAACAA ACCTTAACTA TATTTATACG CTTTATGGAA AATGACAACA GTAGGTAAGT TTTAAATCCA TTTTTACTTC TCGTTTTTTT GGTCTAACAA GCTTCTTCTG CTTCTTGTTT CTTATCTCCT TCCTCTTGAA CCTTGTAATC TTTATACTGA AAGCTGTTTC ACAATCTTGT TACTTATAGT TTGGTCCCAA ACCTGTCTAT GTCCCTCTGT TTCTGTCCCT TGTTTCATGT AGAGTAAAAA ATGGTTATTG TCTTAATATC ATACACGTTT TAGTGAAAGA TGATTGTTTA AA |
| Length | 2522 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 992470.. 996576 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G46410.2 |
| Description | SCP1-like small phosphatase 4 |
| TAIR curator summary | Encodes a SCP1-like small phosphatase (SSP). Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4). |
| Alias | [SSP4][SCP1-like small phosphatase 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 11.7473 |
Ahg476815 | Chlorophyll A-B binding family protein |
| 15.1987 |
Ahg494587 | Calcium-binding EF-hand family protein |
| 17.6635 |
Ahg320670 | PLANT U-BOX 12 |
| 24.5967 |
Ahg478246 | DHHC-type zinc finger family protein |
| 28.2843 |
Ahg479444 | ABRE binding factor 4 |
| 30 |
Ahg477464 | Regulator of chromosome condensation (RCC1) family protein |
| 31.0483 |
Ahg934965 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| 36.1939 |
Ahg332487 | Calmodulin binding protein-like |
| 36.4966 |
Ahg495985 | zinc finger (CCCH-type) family protein |
| 37.7624 |
Ahg921070 | PLATZ transcription factor family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
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