Detail



ID : Ahg495299

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|495299|fgenesh2_kg.8__1115__AT5G52300.1
Sequence
AAGAAAACAA CGCTAGAACA AAGAGAGTTT GATTGATTCA CTTGAAAAAA GAGAAAACAC AGCTTTGGAA AATGGAGTCG CAGTTGACAC GTCCTTATGG TCATGAGCAA GTAGAAGAAC CAATCAGAAT TCACCATCCT GAGGAAGACG AGCATCATGA TAAGGGAGCA TCTAAAGTGT TAAGAAAAGT AAAAGAAAAA GCTAAGAAGA TCAAGAACAG TCTCACTAAA CATGGCAATG GTCATGATCA CGATGTTGAA GAAGAAGAAG ATGAGTATGA CGAGCAAGAC CCAGAAGAGC ACGGAGCACC AGTGTATGAA TCCTCTGCCG TGAGAGGTGG TGTAACGGGT AAACCTGAGT CTTTAAGTCA TACCGGAGAA ACTAATGTTC CAGCACCGGA GGAGATTGTT CCTCCAGGAA CAAAGGTTTT TCCTGTCGTG TCTTCCGAGC ACACCAAACC CATTGAGCCT GTTTCATTAC AAGATACCTC TTACGGACAT GAGGCACTGT CTGCTCCAGG AGGAGGTTCG GATTATCTTA GTGGTGTATC TAATTATCAG TCCAAAGTTA CTGATCCCAC TCATAAAGGT GGAGAAGCTG GAGTACCAGA GATTGCTGAG TCTCTTAGTC GGATGAAAGT GACTGATGAG TCTCCTGATC AGAAATCAAG ACAAGGATTT GGAGAAGACT TACCGACGAG AAGCCAAGAA TTTGGTCTGA AGAACGAATC TGATATCAGC AAGGATTCTC CGGCAAGACT TGGAGGAGAA TCAAGAGCTG GTCTCGGGGA AGATTTTCAG AGAAGAAGTG ATGATGTGAA AGCAGAGACT GGGTTGGGAA GAGACTTACC GACCGGAACT CATGATCAGT TCTCACCGGA ACTATCTCGT CCTAAAGAGA GAGATGATTT TGAGGAAACC AGAGATGAGA CGAAACAGGA GAGGAAACCG AGCACCTACA CAGAGCAGTT AGCTTCAGCT ACATCAGCCA TAACCAACAA AGCTATAGCG GCTAAGAACG TCGTCGCCTC AAAGCTAGGT TACGGAGAAA GCGGCGGCGG GCAATACGAA AGCGCTGAAA AGGATGAAAC TCCGAGGTCT GCTACGGGTT ATGGGCAGAA AGTGGCGGGA ACTGTTGCTG AGAAGTTGAC TCCGGTCTAC GAAAAGGTCA AAGAGACAGG ATCAGCCGTG ATGACGAAGC TACCTATCTC CGGAGGTGGA AGTGGAATGA AGGAGACGCA ACAAGGTGAA GAGAAAGGTG TGTCGACTAG AGATTATCTA TCGGAGAAGC TGAGACCTGG AGAAGATGAC AAAGCTTTAT CGGAGGTGAT AGCTGAGAAA CTTCATTTTG GAGGAGGAGA AAAGAAGACA ACGGCGACAA AGGAGGTGGA AGTGACGGTG GAGAAGATAC CTTCCGACCA GATATCGGAG GGGAGAGAAC ATGGTGAGGC GGTTACTGAG GAAGGGAAAG AAGAAGGAAT GGTGGGGAAA GTTAAAGGAG CGGTCACTTC TTGGCTCGGT GGTAAGCCGA AATCGCCACA TTCAGTTGAA GAGTCTCCAC AATCACTTGG CACCACCGTT GGGACTATGG GGTTTACGGA TTCCAGTGGA AGTAAGTTGG GTGGTACTGG CGGAGCTAAG GGAGTTCAAG ATTCTGGGAA CTGAAGATTT GGGGTTTTTC CTTCGAATGT CTGTGTTTTT GTATGAT 
Length1707
Protein Sequence
Protein Residue
Map Locationscaffold_8: 14159841.. 14161932
Download Sequence
A.thaliana
AGI-codeAT5G52300.1
DescriptionCAP160 protein
TAIR curator summaryencodes a protein that is induced in expression in response to water deprivation such as cold, high-salt, and dessication. The response appears to be via abscisic acid. The promoter region contains two ABA-responsive elements (ABREs) that are required for the dehydration-responsive expression of rd29B as cis-acting elements. Protein is a member of a gene family with other members found plants, animals and fungi.
Alias[LTI65][RD29B][LOW-TEMPERATURE-INDUCED 65][RESPONSIVE TO DESSICATION 29B]
Gene coexpression
MR
MR Locus Description
3 Ahg483960 TSPO(outer membrane tryptophan-rich sensory protein)-related
3.16228 Ahg496967 Dehydrin family protein
3.16228 Ahg325294 Late Embryogenesis Abundant 4-5
4 Ahg934938 Transmembrane amino acid transporter family protein
4.58258 Ahg356702 heat shock transcription factor A6A
6.32456 Ahg487924 CBL-interacting protein kinase 5
6.63325 Ahg483012 delta1-pyrroline-5-carboxylate synthase 1
7.34847 Ahg921008 cold-regulated 47
7.74597 Ahg952470 delta1-pyrroline-5-carboxylate synthase 1
8.12404 Ahg486924 RING/U-box superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression