| Annotation |
|---|
| Description | jgi|Araly1|497372|fgenesh2_kg.271__2__AT5G52290.1 |
| Sequence |
ATGCGAACTC GATTTCTCAA CATCGATTAC TTCTCTACTC CATCTTCTCA GGTATTTGAA ACCCTAGGCT TCCTCAATCT TCCGGCTCCT GATAATTTTC CGGCACCTAT CGTCTACGAC GGAGAAGAAG ACCGTCTCCG ATTTGGCTCT GTCGAAAATG TCTGTCTCCC GATCGGAAAT TTTCCTATTG AAGCTGCTTT GTCGAAGTTC CTTTCCGACG TGGTTCCCGA ACGCGTCAGT GTGGACTATG GAGCTTTTGA AATCGATGAT TCTTCCCTCG GAGGTTATTT CTCAGACGAG AAGAATGACG GAGATGCCAT TGAGGACAAA GCTACATTTA ACATTATAGA GTTGGAGACT CCGGAGTTGG ATTTTGAAAT GGTTAAATAT GTCGAATTAG ATACTATCTT ACAGAACTCA AATGACATCC ATCGAAGGAT TTATTCTGTT GATTACATTT CTTCTGATTA CTTCATAGAG AATAATACTT CGGCAACAGA AAATGAATGC TCCAGCAAGA ATCAACCATG GTTCAAAGAT GCCAGATTTC CCCTTCTAGA AGTGGATGAA GTAAACTTGA GAGAACTATC GAGCTTATCT ATGCTTGATA AAGTATTTAC TGTTCTTGAA ACAATTGAAC CCCAAGACAA GAACGCAGCG AGTGCTCTCA TTATCAATTC TAATGACCTT ATAGGCTCTA AGGGTTATGA TCTATTGGAT ATCCTCTCTA CGGATTGCTA TTTGAACAAA AGTGGTCAAT CTGATGTGGG GCCAGAGGAT GGATTTTCTA AAGTGGATAT AGTTAATATC CTGGAAATAT CAAATGCTGA GGAAAATTTT CTGTTTGAAC AACAGGGAAA GGTGGCTCTC CCAGTAACTT TTGAGGAATT TCAGATCCTG GATGTGGAGA TATCTGATGT TTTTGACATC TTCCTTTGTC TTCAAAAAGC CATTGAACCA GAAATATGTT ATGGGATGTT TAGTAAAGAG ATGAACTTCA AAAATTTCGA TGAATTAGTT GTCAGTTCTG AACTTGCCTT CACAGATGAT GCCTTCAAGT CTCTGCCTAC TCCTATTTTA CATGATTATG AGGTGACAAG ATCTCTGGAT CTCATTTATG AGGATGTTTT GTCAAAGATC AAGCCTCAAT CCTTGTCTGC TTCAAATGAC ATATACTTGC CCTGGAACCT TCTTGAGGAA AGAAACCACA ACCATTGTGA TTATCCGTTT GAAGAAATAG TTACACTCAA CATTGATTTT AAGTGGGAAT CTTCAGAAGG AGACAAATGG GTTTATGATT TCATTTTCTC TGAAGATGCT TTCAGCGAGC CACTTGTAGA GAAATGCACT GAACCTTTCT ATGGTATATC TACCCTTGAT GAGCATGCTC CTGTTAATAC TTCTCATGGG TTATTGGAAA ACCCTTTCCA AAAAACAGGA GCCAGGGATT GTGGAGTGGA TGATAATGCT AAGAAGGCTA CGTTGTTGTT CAAATCAATG TCTGCGTTTG ATGACTTAAC CTTTTTCATG GATCCTCAGA AGGCTGTGAT TGAAGATTAT CTCGGGTCTA GAGTAGAAGC TGCTAAGACT GCCAACCATA AATTTATGTC TATTGACTCG AAGGCTTCAT GTATATCTGG TGGCATGCAC CCAAACCTGA AGACGGAGGA AATGATACTT CACAGTGTGC GCCCTTCAGA AAATATACTG GTTCTTGTTG GGGACTTTGT GAAGAGCTAT TTAACTCTTG TGAAGGATGA ATCAGAGAAT TTATCAGAAG ATAAACTTAA GTTACTCAGC ATATCTAAAG GAAAGCTTAT TGACTGCATA AGAAAGGCAA ATGTCCACAA AACACAGTTG GCGGATGATA AGACTTTCAC GTTTGCATTA CTACTAGCAA TTAAACAGAT GACATGGTAT ATGTGTTTCT TCGGTATCCA TGTGGCATAT CTCTATCTTA ACAAGTTATG TCGAAGCTCA AATCCCATGA AGCTAGGATT GCATACCCTC TACTCAGCAG TTGAAACAGA ACACAAATCA GATGAGACAG ACGTCACAAG ATCACATCCA TCACTAGCTG TTATCCAGGG GATTTTACAG TCAGAATTTG CCCAGGGGAA CTCTAAAGCA TTACTTTTGG CTGAGAAAGT TTTTTGGTCC TCGCTGAAGA GGCTACTGAT GTCCATGGGG TTATCTTACA ATGAGCTCAA CAGTCCCTCC CCAAGTGGAA ATCGACCAAA TGTTCATGAA GCCATGGGGT TGAATACCAT AGAACATGGT TTCCTGCCGA TTTCAGACTG CCTAATTATC TCTTACGAGC AAATTTCTCC ATCTTTTCCT GTGGAGAATT TCAGCGTCAT TGTAGAATAT GGAGGTCCAA ATGTCTCGCC CAGATTTTCT TTTCCTTCGA AGTTGGATTC CTTTCCTGAC TTCCATTTCA TAAAAGTTGA GATGGATATG TCCAGTGCAT GCGGGCAACT GTGTGCAGGT GTTACAGTAC CTTATAGTCT CAAAATGATA AAGGGAGATG AAGTTGAGAC GAAAACTGGC TGGTTGGAAG AAGTGTTGAA CTTTGTTCCA CTTGAAAGTG TGTGTTATGC AGTATCTTCA GAAACCACAA ATGAATCTGA ATACATTTCC ATGCCTCAAG AATCTGAAAG AAAACGTGGG ATAATTGAAC AAGGAGTTCT CTCTGACCAA AGATCTGTGA TTGTTGTGAA CACAAAAACT GTTGATAAGG AGATGATCAT ATCCAGAAGA AGTACATACC TGAAGGTGTT AGCAATGGAA AAAGAAGGAG TGCAAGTTGT GGAGCGCGAT TCAGATCTAC CTGTGGACCT GATGCTAAGT CCTGCAGTTT GCCTACTCTG GTATGATTGT GAAACTGTTA GTAAGAAGTC GGCTGCAACT ATTGGTACTT CCTCAAGCTC ACTTTCATGG ATTGGAGATA TCGCAACCAA TGTTTTGACG TCATTGAGTT TTAGTTTCAG CACCTGCATT ATGGTTTTTG AGGGGGAACC CACCTTCCTG GCTACAATAA TGGACTCCTC TGATGAACTG TATGCAGCAG CTGGTAGCCT GGGAATCAGT TTACAGATGT TTTGCTCATC GTCAGCTGAT TTCACGGATG AAATTATATT GAGGTGTATC AAATCTTCTG TTAAGTTGTC CAAACTCCAT GTCAAAATGC CAGAGTCAGA ATCTCTAGCA GAATCATTTT TCACCAAGTT TCCTTCCGTG AATCCACTCA CAGCCCAAGT AATTCTGTCA TCTTCTGGGT CACTTCTCGA ATTCATGAAG CTCCCACATA GTAGCAAGGT TGAAAGGATG CAAAAGTATC AGGTACATGA AGAGAGTGTT GAACTATTTA GTTCACTATG CAGATACGGA GCGAGGGAGG ACTCCAGATC TGTAATGACA GACAGCTCGT CTTCGGTATC TTCTGGACCT GACTCAGACA CACACCATGT CAGTGTCCAT TCTGGTTGGA GAAAGAAACA GTATATTGCT GAGAAAGATG AGATAGATAT GGACGACTTG GTCCATTTTG CTCCCTCTAC AGAATTTGCT GATGCGCAGC TCAAGTCTTC TGGGGATTTC CAACTTGATG ATTCTTGGTC ATCGAGAGAT CATGAGATAT TTCGTTTTAA CCCTGTCACT GAATTCTCCG ATGCACCTTT CAAGCCTTCT GGGATCAGTC ATCCCAATGA CTCTTGGCCA TCTAAAAATC CTGAGAGATT TGACAAGAAG TCAGGACCTG GTTCATCATC AAAGGACACA TTTTGGGAGA AAGATCAGCC TGATTTTTCA GTGGAGGACA GTCTCCCTGG AATTCCTGAA TTAGAAGATT GGAGTTTCCC AGTTAAAGAC AAATTCAAGA GCCAGAACAG AGGATGTAAA TTTCCGGTGA TGGGAGATTT CGACTTGCAT GACAATAGGA ACTCAGAGAA TTTCATCGCA GACTACAAAG GTGAAGTAAT CGACAGAGCT GATAAGTTTC TGGAGGAAGA CTTCCCGCCT TCTCCTGTTT ATAATAGGTT TGCTCCAATA GTTTCTGATG TTGATGAAGA GGAACTTCCA AGAAAATCAA AATCTGCAAG GAAATTATCT TTCTTTGGGT CTCTCCAGCC TAACTTCCCA AAAACGGCTG ACATCGACTT GAGTTCTGAA AGATTCGCCT CAGAGAAAGA TTCAAATAAT GATAACAATG CTTCTTTGCG TGGTTATGTA GATAACTATC CAGCAAAACG CCAAAGGACC CTTTTGGAGG AGGTCTTAAC ACGAAGATCT GCAGTTCCAA CAACAGAGCT TCCATTTAGA GAAGAGATAT CACATTTTGG TGGATCTCCA CTATCGAACG CAATCCGTTC TTCAAATCAA GTACAAAGTT CTCCTTGGAC GGTTGATTTC CTTAACAGAG TTCGAGAAAG AAGCAGGGCA AGGAAACAAC ATCAATCTCT TCCTTCTTAT GTCAATCCCT CTAGCTTGGA GACTCCAGGG AACATAAAGA AAGCTAGTAC CAAGAGAAAG AGTCCTTCCA TACTAGAGTT TTTCAAGTAT AAAGGAGGCA AAAAATTTCC AGAAGAGAAA AAGCAGAAGC GTTCAAAAAC TTCTTCAGCC TCGCCAAAAA ACGAGAGATT TTACTCGCCT CTTAAGTCAT GGACACCAAT TGATAAACGA GCAAAACAGT CTCTATCTTA CACAGTAAAT GGAACTGGAG GCCAAACAAA ACTTGTCTGG AAGTAA |
| Length | 4746 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_271: 3203.. 9339 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G52290.1 |
| Description | shortage in chiasmata 1 |
| TAIR curator summary | Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility. |
| Alias | [SHOC1][SHORTAGE IN CHIASMATA 1] |
| Gene coexpression |
|---|
| MR |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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