Detail



ID : Ahg888927

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|888927|Al_scaffold_0007_913
Sequence
ATGTTCGATG CATTTGCTTC TCTTGCGTGC TCACTGCTCT ATCTGTCAGA TTTCGGCTCC GATTCGGTTC CGTTCACGTT TTCTTCTTCT AATTGTGTTC CAATCTCTCA CTTTCTTTCT CATGTGTTCT TCATCTCTCC AAAGGGATGT AATGTTATCT TGGGGTTTTC TTCTGGTGAG TAG 
Length183
Protein Sequence
Protein Residue
Map Locationscaffold_7: 3870069.. 3871234
Download Sequence
A.thaliana
AGI-codeAT4G31877.1
DescriptionMIR156C; miRNA
TAIR curator summaryEncodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC
Alias[MIR156C][microRNA156C]
Gene coexpression
MR
MR Locus Description
1.73205 Ahg934730
1.73205 Ahg950037
1.73205 Ahg946550
2.44949 Ahg924339
3.74166 Ahg932000
6.32456 Ahg900634 Protein kinase superfamily protein
8.12404 Ahg899521 RAB GTPase homolog H1D
11.9164 Ahg321961 HVA22-like protein F
12.4499 Ahg949441 ATP-dependent protease La (LON) domain protein
13.5647 Ahg931073 Basic-leucine zipper (bZIP) transcription factor family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression