| Annotation |
|---|
| Description | jgi|Araly1|890603|Al_scaffold_0007_2589 |
| Sequence |
ATGTCGGAGA AGTTTTCACC GGCTTTGAGG CTTGGAGATC TCAACGATTT CATTGCTCCG TCTCAAGCTT GTGTCATATC TCTTAAGGAT TCAAAACCCA TCGTCAAGAA GTCTGATCGA CCCCAGGTTG TGATTGCCCC AAAACAGCAG CTTGAACCGG TCAAAATTTC TCTCAAGGAT TGCTTGGCTT GCAGTGGATG CATCACATCA GCTGAGACAG TTATGCTTGA GAAGCAAAGC TTAGACGAGT TTCTCTCTGC CCTTAGCAAA GGCAAGGACG TGATTGTGTC CATTTCGCCG CAGTCGAGAG CTTCCCTTGC GGTTCACTAT GAGATCTCTC CTCTTCAGGT TTTCAAGAAG CTAACTACGT TTTTGAAGTC TTTCGGAGTT AAAGCTGTGT TTGATACAAG CTGCAGTAGA GACTTGGTAC TTATTGAAGC TTGTAATGAG TTTGTGAGCC GTTACAAGCA AGCTAATTCT GATGATGGTG AAAATTCTCA ATCCCCTCTC CCTGTGCTTT CCTCTGCCTG TCCTGGTTGG ATATGTTATG CTGAAAAGCA GCTTGGCTCA TATGTTCTGC CGTATGTCTC CTCTGTTAAG AGTCCTCAGC AAGCTATTGG AGCTGCAATC AAACACCATC TGTGTCAAGC ATTAGGACTC AGGCTGCAGG AGGTGTACCA TGTGACTGTG ATGCCCTGTT ATGATAAGAA GCTCGAGGCA GCAAGAGATG ATTTTGTCTT TGAAGATGGA GCACAAGATA ATGGAGGCCT CAAGCTGACA GAGGTTGATT CCGTGCTAAC AACTGGTGAA ATCTTGGATT TAATAAAGTT GAAAGGAGTT GACTTTAAAG ATCTGGAGGA ATCTCCACTC GACAGAATGC TGACGAATGT TACTGAGGAA GGACATCTTT ATGGTGTAGC TGGGAGTTCT GGGGGTTATG CAGAAACAAT ATTCAGACAT GCGGCAAAAG CACTATTTGG ACAAACTATT GAAGGTCCTC TGGAGTTTAA AACTCTCAGA AATTCTGATT TCCGTGAAGT AACTCTTCAA TTGGAAGGTA AAACAGTGTT AAAATTTGCG CTGTGTTACG GTTTCCAGAA CCTTCAGAAT ATTGTTCGGA GAGTGAAAAC GCGCAAATGC GATTATCATT ATGTAGAGAT TATGGCGTGC CCTGCAGGTT GCCTAAATGG TGGTGGGCAG ATCAAGCCAA AGACAGGGCA GTCCCAGAAA GAACTGATCC ACTCACTGGA AGCTACTTAT ATGAATGATA CTACTTTGAA TACAGATCCA TACCAGAATC CAACGGCCAA GAGATTATAC GAGGAGTGGC TTAAAGAGCC TGGCTCCAAC GAGGCGAAGA AGTACTTGCA CACTCAGTAC CATCCGGTCG TGAAAAGTGT TACGTCGCAG CTCAACAATT GGTAG |
| Length | 1425 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 11308618.. 11310955 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G16440.1 |
| Description | ferredoxin hydrogenases |
| TAIR curator summary | Encodes a [FeFe]-hydrogenase-like protein named Gollum (for Growth in different Oxygen LeveLs inflUences Morphogenesis). Heterologous expression of Gollum in E. coli indicates that it probably contains two [Fe-S] clusters with different magnetic properties. Sequence alignment analysis indicates that these two clusters would be topologically equivalent to the mesial and proximal [Fe-S] centers of [FeFe]-hydrogenases. Knockdown mutants (RNAi) show a dwarf phenotype at the normal atmospheric partial oxygen pressure of 21 kPa. This dwarf phenotype could be rescued by growing the plant under low oxygen pressure (5kPa), suggesting a role for this gene in oxygen sensing. |
| Alias | [GOLLUM][NAR1][Growth at different Oxygen Levels Influences Morphogenesis][homolog of yeast NAR1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 14.4914 |
Ahg933239 | Ring/U-Box superfamily protein |
| 15.2971 |
Ahg927599 | Galactose mutarotase-like superfamily protein |
| 17.8606 |
Ahg475928 | |
| 18.1934 |
Ahg496351 | |
| 19.4936 |
Ahg933190 | Pleckstrin homology (PH) and lipid-binding START domains-containing protein |
| 24.7992 |
Ahg492904 | Ras-related small GTP-binding family protein |
| 27.6586 |
Ahg920672 | Homeodomain-like/winged-helix DNA-binding family protein |
| 30.2324 |
Ahg484508 | global transcription factor group E8 |
| 38.8844 |
Ahg475764 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| 43.4166 |
Ahg488997 | RING/U-box superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
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| The four seasons |
|
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| Growth Chamber expression |
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