Detail



ID : Ahg896923

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|896923|Al_scaffold_0005_889
Sequence
ATGGAGTCAT TCACTAGAAA CTTCGACATG AAAGGCGGCG AATCCAAAGC TGAAGCAACG AGCACTGATC AGAGGTTAGG TTTCTTCTCC GACTTGAGAT CCAGATTTGT TTTCGCATCT TCAAAATCTG ATTTCTTCGT TTTCCGATTT ATCAGACTCA AAACCAGAGG TAGAAAGCCT GGGAAGAAGA CGAAGAAGGA TCCAAATCAA CCTAAGAGAC CTCCAAGTGA GAGAAAAAAG AAGATCTATG GGTTTGAATT CTAA 
Length264
Protein Sequence
Protein Residue
Map Locationscaffold_5: 5502809.. 5503643
Download Sequence
A.thaliana
AGI-codeAT2G17560.1
Descriptionhigh mobility group B4
TAIR curator summaryEncodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.
Alias[HMGB4][NFD04][NFD4][high mobility group B4][NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4]
Gene coexpression
MR
MR Locus Description
29.7321 Virus2873
63.4823 Ahg491759 Ypt/Rab-GAP domain of gyp1p superfamily protein
72.9931 Ahg950326
77.6917 Ahg352297
85.6271 Ahg477878 Protein kinase superfamily protein
91.6842 Ahg938068 Protein kinase superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression