Detail



ID : Ahg897878

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|897878|Al_scaffold_0005_1844
Sequence
ATGTCTAGAA AGAAGGAGCT TCTGTCCTCA GCTATGGAGA GAACTAGTGA ATGGATTTCT TCTCAAGAAA TTCCTAGTGA CGTCACTGTT CATGTTGGAG AAACTTCGTT TTCACTCCAC AAGTTTCCAC TTGTTTCAAA ATGTGGGTTT ATAAAGAAAC TTGCTTCCAA ATCAAGCAAC GATTCGAACA TTACCGTTAT CAAAATCCAA GATTTTCCCG GAGGTGCAGA GGCATTTGAG CTAGCAATCA AGTTCTGCTA CGACATAAGC TTCGAGATAA ACACAGAGAA CATTGCGATG CTACGTTGTG CAGCAGAGTA TCTAGAGATG ACAGAGGAAC ACTCTGTTGA AAACCTAGTG GAGACAATAG AGGTTTACCT AAACGAAGTG GTCCTCAAGA GTTTATCGAA ATCGGTTAAA GTTCTGCGAA AATCTCAAGA TTTGTTGCCT ATAGCCGAGA GAGTGAGACT CGTGGACCGG TGTATCGATT CAATTGCTTA TGGAGTTTGT CAGGAGAGCC AGAGCAATGA GGACATAGTT GACTGGTGGG CTGAGGATTT AGCTGGTCTA AGGATTGATA TGTTTCGACG TGTCTTGGTC GCGATGATTG CTAGAGGGTT TAAGCGATAC TCACTTGGTC CAGTACTTAT GCTCTATGCC CAAAAAGCTC TTAGAGGGTT GGACATTTTT GAGAAAGAGG CAAAGAAGAT GGAGGCGGAA CAAGAACATG AGAAAAGGTT GATTCTTGAA ACAATTGTGA GTCTTCTTCC GAGGGAGAGA AACTCAGTGT CAGTTAGCTT TCTTTCGATA CTTTTAAGAG CTGCGATATA CCTCGAAACC ACGGTAGCTT GCAGGCTTGA TTTGGAGAAG AGAATTGGAT TGCAATTAAG ACAAGCCGTG ATTGATGATC TCTTGATTCC TTCTTACTCA TTCAGTGGAG ACAACACAAT GTTTGATGTT GACACTGTTC AACGCATCCT CATGAACTAT CTTGAGTTTG AAGTTGAAGG AAACTCTGCT GACTTTGCTA GTGATATTGG TGAATTGATG GAGAGTTATC TGGCTGAAAT CGCTTCTGAT AAAAACATAA ACTTGGCGAA GTTCATCAGT TTTGCTGAAT GCATTCCAAA ACAGTCTCGG GTTACTGAAG ATGGGATGTA TCGAGCCATA GACATCTACC TCAAGACACA TCCGAATATA AGTGAAATGG AGAAGAAGAA AGTTTGCAGC TTAATGGACT ATCAAAAGAT ATCGCGAGAA GTGTATGCTC ACGCAGCTCA AAATGATCGT CTCCCTGAAA TTTTAAGCGA TTCCGATTCT CCAGCAGCAG AAACCGCAGA AGAAACTATT CCTCCTCCTG AGCTCAGCTC CTACAAGAAT GAACTCTCCA AACTAAACCG GGAAAACCAA TACTTGAAGC TTGAGTTGCT CAAAGTGAAA ATGAAGTTCA AGGAGTTTGA GAAGGAGAAA GCTTATGAAG TCATGAGTGG TTCGGATTGT TCTTCTTCGG TTTCAACTGC TTCGGTTGTT AAGCCTCGAT TACCAAGAAA GTCATTTATA AGCTCTGTTT CTCAAAAACT CGGAAAGCTT AACCCTTTTG GCCTCAAACA AGGACAAACC AAACCACCTA AAAGCCGAAG ACACTCTATA TCTTGA 
Length1656
Protein Sequence
Protein Residue
Map Locationscaffold_5: 14036115.. 14038127
Download Sequence
A.thaliana
AGI-codeAT3G49970.1
DescriptionPhototropic-responsive NPH3 family protein
TAIR curator summary
Alias
Gene coexpression
MR
MR Locus Description
2.44949 Ahg904533 DNA topoisomerase-related
8.94427 Ahg485213
23.5584 Ahg471358 Vacuolar calcium-binding protein-related
30.7409 Ahg488089 O-acyltransferase (WSD1-like) family protein
30.9677 Ahg482950 jacalin-related lectin 22
31.749 Ahg484409 Polyketide cyclase/dehydrase and lipid transport superfamily protein
46.8508 Ahg489965 Papain family cysteine protease
51.923 Ahg333044 early nodulin-like protein 19
53.8331 Ahg490489
54.037 Ahg896925 HXXXD-type acyl-transferase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression