| Annotation |
|---|
| Description | jgi|Araly1|903463|Al_scaffold_0003_591 |
| Sequence |
ATGGTGGCTC AGCAGCTTCA AGAGAGATGC GGCAATTCTC AAGAAGATCC AGTTGAGACC ACCAAGTCTC TGATCTGTGC TCTCAATTAC ATTTCTCGTG ACCTTCCTTT GCCTCCTCAC CTCTTCGCCG CCGTTTCCTC TATCTACCAT GGCGCTTCTT CTTCTCTTTC CGACTCCGAT GTCTCTCCGC CGCTGCCTAC TTCCCCGCCT GGGAATAATT TAACTCCCTA TGGAGGTGAT TTGATGGGTG AGTTCGAGGA TGCACTTTTG AAGCAGAGAC CAAATTGTGA ATCAGGCTCT CGATTGATAG AATTACTCGA TAATCGGAAT AAGAGTCATA TCCAACGCCG CTTATCTGAA CTTGAAGCTT CAAGCGGAAT GCTTACTCTT TGTGTTTTTA AATCAGAATT ACCTTCTACT AGAGGTGAAG ACTTGCAGGC AAAATGCTTA CTTGAGCTTT ATGGGCTTAA GCTACGAGAA TTGCAAGGCA AGGTTCGAAC CGCGGTGAGC TCGGAATTCT GGCTACGTCT GAACTGTGCA GATGTCAGTA GCCAACTATT TGACTGGGGC ATGATGCGGT TGCCTCGTCC ATTTTATGGG GCTGGAGATC CTTTTGCTAT GGAAGCTGAT GATCAGTTCA GAAAGAAGCG TGATGCTGAG TTTTCAAACT TCTTGATTTG CATTGCTGAT GTGTTAAAAG TCTTTGTTCA GAGGTTATCA CGTTTAGAAG AAGAGGAGAA GAATCTGATT GAAACCGCCA AGAGGAAATT CTTTGCAGAA GTACTTAATG CAGTTCGTGA ATTCCAGTTG CAAATTCAGG CGACTCAAAA ACGCCGTAGG CAAAGGAATG ATGGTGTGCA GGCTTGGCAT GGGAGACAAA GACAACGTGC TACCCGTGCT GAAAAGTTGA GGCTCATGGC CCTTAAGTCT GATGATCAAG AGGCATACAT GAAACTAGTA AAGGAGAGTA AAAATGAAAG ACTAACCACT CTTTTAGAGG AGACAAACAA ACTCCTTGCT AATTTGGGAG CTGCTGTTCA ACGTCAGAAA GATGCTAAAC TTCCGGAAGG CATTGATCTT CTTAAAGACT CAGAATCTGA CTTGTCTGAA CTTGATGGTC CAAGAAGTGA ACCATTGCAG GATCTGCTTC CTGATCAGGA TATTGATATT ACTGAGTCTG ACAATAACGA TGACTCTAAT GATTTACTAG AAGGACAGAG GCAGTATAAC TCTGCTATCC ATTCAATACA AGAGAAGGTG ACGGAGCAGC CCTCACTTCT AGAAGGTGGG GAACTACGAT CCTATCAATT AGAAGGGCTC CAATGGATGG TTTCTCTATT CAACAATAAC CTCAATGGAA TTTTAGCTGA CGAGATGGGT TTGGGAAAAA CTATTCAAAC TATTTCTCTG ATTGCGTATC TTCTGGAGAA TAAAGGTGTG CCTGGGCCTT ATCTTATAGT TGCTCCAAAA GCTGTGCTAC CAAATTGGGT AAACGAGTTT GCAACATGGG TACCAAGCAT TGCAGCTTTT CTTTATGATG GACGTTTAGA GGAAAGAAAA GCAATAAGGG AAAAAATTGC AGGAGAAGGA AAATTTAATG TGTTGATAAC CCATTATGAT CTTATCATGA GAGATAAAGC ATTTTTGAAG AAAATTGAGT GGTACTACAT GATTGTTGAT GAAGGACATC GGCTGAAGAA CCATGAATCT GCTCTAGCAA AGACTCTAGT AACAGGCTAT CGTATAAAAC GCAGACTTCT GTTAACCGGG ACACCCATAC AGAATAGCCT TCAAGAACTA TGGTCATTGC TTAATTTTCT CCTTCCTCAC ATCTTTAACT CAGTTCAAAA CTTCGAGGAA TGGTTTAATG CGCCTTTCGC TGACCGTGGT AATGTCAGTC TTACGGATGA AGAGGAGCTC TTGATTATCC ACCGTCTGCA TCATGTTATA AGGCCGTTTA TACTGAGAAG AAAAAAGGAC GAAGTAGAGA AATTCCTTCC TGGAAAGACA CAGGTCATAT TGAAGTGTGA TATGTCGGCA TGGCAGAAAG TGTATTACAA ACAAGTTACA GACATGGGCA GGGTTGGCCT TCAAACAGGA TCTGGGAAAT CAAAGAGTCT GCAAAATCTA ACGATGCAAT TAAGAAAGTG TTGTAACCAT CCCTATCTAT TTGTTGGAGG AGACTACAAT ATGTGGAAGA AACCTGAGAT TGTGAGAGCT TCAGGGAAAT TTGAACTCCT TGATCGTCTC CTTCCAAAAC TGCGCAAGGC TGGACATAGG ATTCTTCTCT TCTCCCAAAT GACCCGTCTC ATTGACGTTC TTGAGATATA CTTGACACTT AATGATTACA AATACCTTAG ACTCGATGGT ACCACAAAGA CAGATCAAAG AGGGCTTTTA CTGAAGCAAT TCAACGAGCC AGATTCTCCC TACTTTATGT TTCTTTTGAG CACACGTGCC GGAGGTCTTG GTTTGAACTT GCAAACTGCA GACACTGTTA TTATCTTTGA CAGTGATTGG AACCCACAAA TGGACCAACA GGCCGAGGAT CGAGCGCATC GCATAGGGCA GAAGAAGGAA GTCAGAGTGT TTGTTTTGGT TAGCGTTGGC TCCATTGAAG AAGTAATATT GGAGCGTGCA AAGCAAAAGA TGGGCATTGA CGCCAAAGTC ATACAAGCTG GACTTTTCAA CACAACTTCC ACTGCACAAG ACCGAAGAGA GATGCTTGAA GAGATTATGC GCAAAGGAAC AAGCTCGCTT GGGACAGATG TCCCCAGTGA GAGAGAAATA AATCGGCTCG CGGCTCGTAG TGAGGATGAA TTTTGGATGT TTGAGCGAAT GGATGAGGAG AGACGAAGGA AGGAGAATTA CAGAGCCCGT CTGATGCAAG AGCAGGAAGT CCCTGAGTGG GCGTACACTA CTCAGAGCCA AGATGAGAAG TTGAACAGCG GAAAGTTCAA TTTTGGGAGT GTCACAGGTA AGCGAAAACG TAAAGAGATC GTTTACAGTG ACACACTAAG CGAGTTACAG TGGCTGAAAG CCGTGGAGAG CGGTGAAGAC CTGTCAAAAC TCTCTATGAG ACATAGGAGA GAGGAGAACA CAAGCAACAC AAAGACACCA ACGAGTAAAA AAGCGATAGA ATCTATCCAA ACTGTGAGTG ATGGGACGAG CGAGGAGGAG GAAGAAGAGG AAGAAGAAGA AGATAGAGCA AAGGAGATGA GTGGAAAACG GAGAGTGGAG AAGTCTGAAG AAGAAGAAGA AGGTGAAGAA GAGAATGATG GAAAGGCAAT ATTCAAGTGG AATACTCATA AGAAGAAAAG GTCTAGATAC TCTTTTACGT GTTCTTCGTC TGACTCTAGA GCTCAAAGTT CCAACGGAAG TAGACGAAAA TGA |
| Length | 3393 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 2256461.. 2261310 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G06010.1 |
| Description | Homeotic gene regulator |
| TAIR curator summary | Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress. |
| Alias | [ATCHR12][CHR12][chromatin remodeling 12] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.23607 |
Ahg482629 | demeter-like 1 |
| 5.2915 |
Ahg484260 | SPFH/Band 7/PHB domain-containing membrane-associated protein family |
| 11.7473 |
Ahg924847 | phosphoinositide binding |
| 13.0384 |
Ahg484168 | cullin-associated and neddylation dissociated |
| 14.2829 |
Ahg488065 | las1-like family protein |
| 20.6398 |
Ahg938953 | farnesyltransferase A |
| 26.3818 |
Ahg323893 | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain |
| 30.8869 |
Ahg491048 | |
| 31.1769 |
Ahg935133 | protein phosphatase 2A-3 |
| 31.4643 |
Ahg494187 | D6 protein kinase like 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|