Detail



ID : Ahg907330

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|907330|Al_scaffold_0002_411
Sequence
ATGGATCCGA CCATGATGGT GTTGCAGAAA CTTATGTACG AGGTAGTTAT CCAGGGGTCG AAACACCATC ATGGTCAGAT CCGTCATCCC ACTTATGTTT TTTTAGGTCA ACAAGGATAT TGGACAATCG AAAAGTGGAG CTCTATTTAT GACGGTATGT TTATGTATCT CTTGGAATTT GAGATTAACC ATCTCAATAA CAAACATCTT GAATGTGTTG AGGTTGATCA CGATGATGCC ACGTCCGGTT TCATTCAGGG ACTTCAATTC AGAACCAACT TCATGAAGCT AAAGGTTGCG GGAGGCAAGC AGTGGGATAA TGATCTGCAA GTGGAACTTC TTACTTTTAT CATATCCCAT CAGCTCGAAA GTCTTGATTT CACAATGATC GAAATGTTGG AAGCGATAGG CATACTGGGG GGTGGTCACA TCGGTATTCA GACCATCCAT TTTGAATATG TCAAACTTAA AAGTGGAGAA CTCTTTGGTG TTTGGGATAG TGGTTTCACA CAAACGATTG AGATTGACCA TCTTAACAAT GAGCATCTTG AATCTGTTGA GGGTTATTAC AACAATACAT CCTGTAACAT TTGA 
Length594
Protein Sequence
Protein Residue
Map Locationscaffold_2: 2415791.. 2417089
Download Sequence
A.thaliana
AGI-codeAT1G61226.1
DescriptionMIR846a; miRNA
TAIR curator summaryEncodes a microRNA that targets several Jacalin lectin family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGAAUUGAAGUGCUUGAAUU
Alias[MIR846A][microRNA846A]
Gene coexpression
MR
MR Locus Description
4.47214 Virus1531
7.74597 Virus0351
10.9545 Ahg895617 SAUR-like auxin-responsive protein family
13.3417 Ahg913771
15 Ahg321132 Cysteine proteinases superfamily protein
15.8745 Ahg949525
16.2481 Ahg925328
17.3205 Ahg944418 SAUR-like auxin-responsive protein family
23.3666 Ahg889827
25.0998 Ahg946796
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression