| Annotation |
|---|
| Description | jgi|Araly1|908733|Al_scaffold_0002_1814 |
| Sequence |
ATGTCCGTCG TTGCATTGGG CCAAGCTATG TGCGACTTCA GTAATCATGA TCAGAAAATT GGATTTGATT TAGGAGCATT TGTCGGAGAC TTGGCTTTTG AAGAGGATTC AGGAGGCAGT GAGGATATAT CATTGGAAGG GCTTCAACAA GAACTTGAAG AATGTGAAAC TGATGAGGTT GTCGCCAATA TACTATCCAA TGGTGACAAA CTTAGAGAAT ATGCAAAAGG TGTAGAAAAC AATCTACTCA AGGTTGAATT GGATTCAGTT CAGGATTACA TAAAAGAAAG TGACAACCTC GTCTTACTTC ACGATCAGAT TCGTGACTGT GACAGCATCT TGTCACAAAT GGAAACTCTC CTCGGTGGAT TTCAGGAAGA GATTGGTTCT ATAAGTTCAG ACATAAAGAT TCTTCAAGAA AATTCAATGG ACATGGGTTT GAGACTGAAA AACCGAAGGG TGGCTGAATC AAAGCTAGCA AAATTTGTCG AAGACATTAT AGTGCCACCA AAGATGATAG ATGTAATTGT TGATGGAGAG GTGAATGAAG AGTATATCAA AACACTTGAG ATTCTGAGTA AGAAGCTGAA ATTTGTAGAA GCAGATCAAG CAGTTAAAAG TTCCAAAGCA TTAAAAGATG TAAAGCCTGA GCTTGAAAAG CTCCGACAGA AAGCTATTTC CAAGATTTAT GATTTTATTG TCCAGAAGCT TATAGCCCTG AAGAAACCAA AAACAAACAT TCAGATTCTT CAACAGAGTG TGTTATTAAA GTACAAGTAT ATTATCTCCT TCCTCAAAGA ACATGGAAAA CAAGTGTTTA TGGATGTCCG CGCTGCATAT ATTGATACCA TGAACAAGGT GTTAAGTGCA CATTTTCATG CTTATATTCA AGCATTTGAG AAATTACAGA TAGATATAGC CACATCAAAT GACTTGATTG GGGTGGAGAC TAGAAGCAGT GGCCTCTTCT CAAGAGCTAG GGAGCCACTA AAGAACCGCT CTGTCGTTTT TGCTTTGGGT GAGAGGATAA AAATTATAAA GGAAATTGAT CAACCTGCAT TGATCCCGCA CATTGCCGAA GCCAGCTCGT TCAAATATCC TTATGAAGTG CTATTCAGGA GTTTGCACAA GCTACTTATG GATACAGCTA CTTCTGAGTA TATCTTTTGT GATGATTTCT TTGGTGAAGC GTCTATATTC TATGAAATTT TTGCGGGTCC ATTCTCTGTT ATCGATGAGC ACGTCAATTC CGTCCTCTCA AACTGTTTTG ATGCTATCGG TCTGATGCTT ATGATTCGCA TTATACACCA CCACCAGCTT ATCATGTCTC GCCGGAGGAT TCCATGCCTG GATTCATATC TGGACAAGGT TAATATTTCT CTGTGGCCTC GTTTTAAGAT GGTGTTCGAC TTACACATCA GCAGTCTGCG AGATGCAAAC ATAAATACAT TATGGGAAGA TGATGTTCAT CCTCACTATG TCATGAGGCG TTATGCTGAA TTTACGGCTT CGTTTATTCA CCTGAATGTT GAATATGGAG ATGGGCAGCT TGATATAAAT TTGGAGCGTT TAAGAATGGC AGTAGACAGC TTGATTCTTA AGCTTGCAAA GTTTTTCCCG AAGCCAAAGC AGCAAATTGT GTTTCTCATA AACAACTACG ATATGACAAT TGCTGTGCTG AAGGAAGCTG AACCAGAAGG TGGGACAATT CAAATGCATT TTGAGGAATT GCTAAAGAGT AACACTTCAT TATTTGTGGA AGAACTGCTG GTGGAGCATT TCTTTGATTT GATCAAATTT GTGAAAAGTC GAGCCTCTGA GGATTCTAGT TCAAATTTAG AGAGGTCCAT CACAGTTGCT GAAGTAGAGC CGCTGGTGAA AGACTTTGGA AGCACAAAGA TATCATAA |
| Length | 1908 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 13983504.. 13986278 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G71270.1 |
| Description | Vps52 / Sac2 family |
| TAIR curator summary | Encodes a homolog of the yeast Vps52p/SAC2. Involved in pollen tube germination and growth. Located in multiple endomembrane organelles including the golgi. The yeast protein has been shown to be located at the late Golgi and to function in a complex involved in retrograde trafficking of vesicles between the early endosomal compartment and the trans-Golgi network. |
| Alias | [ATVPS52][POK][TTD8][ARABIDOPSIS THALIANA VPS52 HOMOLOG][POKY POLLEN TUBE][T-DNA TRANSMISSION DEFECT 8] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 71.5891 |
Ahg485676 | Domain of unknown function (DUF303) |
| 72.581 |
Ahg925626 | |
| 87.1034 |
Ahg895772 | Plant invertase/pectin methylesterase inhibitor superfamily |
| 94.5198 |
Ahg946996 | DNA (cytosine-5-)-methyltransferase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|