Detail



ID : Ahg910550

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|910550|Al_scaffold_0001_804
Sequence
ATGGCCTATA ACAATTTCAC CCGCCTCGAT GCTCAATCCG CCGCCAAGAA AGCCGTCTCA GTGATCGGAT TAGGTTACTA TCTCTGCTCC GATGTTCGTT TCTCCGCTTG TAAAACTACA CCAGACGGTT CCAGGTTAGT CGAAATCGTC CCGACCCGGA ACCGTGACTT AGTCTTCCCC GGTGGGATCG TCGTTAACAA CGTCTCGAGC TCGATTAAGT GCGATAAAGG CGAACGTACT CGATTACGCT CCGATATACT CTCTTTTAAT CAGATGTCGG AGAAGTTTAA TCAAGATATG TGTCTCTCCT GGAAGATTCC GTCGGGGATG TTTAATAATA TGTTTGCGTT TAGTAAATGT TGGCCTAAAG ATGCGAGCTC TGTGAAGAAT TTAGCTTATT GGTTCATTAG CTTGTATATA CGTGTTGAGA TTGTTAGGAA GCAATTGACT CTACGTGATG AAGTGAAACG TGAGGTTCCT TCTTCTTGGT ACTCATGTAG TTGTTGGAGT GAGTACTAA 
Length519
Protein Sequence
Protein Residue
Map Locationscaffold_1: 3023625.. 3024220
Download Sequence
A.thaliana
AGI-codeAT1G28380.1
DescriptionMAC/Perforin domain-containing protein
TAIR curator summaryThis gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots.
Alias[NSL1][necrotic spotted lesions 1]
Gene coexpression
MR
MR Locus Description
1 Ahg359111 MAC/Perforin domain-containing protein
14.8324 Virus0459
14.8324 Ahg497240
17.4929 Virus1001
43.7493 Ahg949029
51.6333 Ahg925827
56.5332 Ahg943229
73.1642 Ahg895363
75.0666 Virus1606
81.3941 Ahg921526
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression